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TGCTCCATCACAACCAATTGATCTCAGCGCTCTCGAGGGTCCTGGAGCGGCGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAGgtactgtgtatttcctgaagagatctgatgggtctggactgctttcctagtttcctagacaccgtattccattgttacag
species | Zea mays |
transcript | GRMZM2G150772_T01 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: CGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAG GTACCACGCGGGGCCCCTGCTGCAGAATGCTACAAGATGGCTCTTGCTCATEST: gi|211235808|gb|FL257327.1|FL257327
genomic: CGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAGgtactgtgta ... attgttacagGTACCACGCGGGGCCCCTGCTGCAGAATGCTACAAGATGGCTCTTGCTCAT
EST: CGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAG GTACCACGCGGGGCCCCTGCTGCAGAATGCTACAAGATGGCTCTTGCTCATEST: gi|50333207|gb|CO528333.1|CO528333
genomic: CGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAGgtactgtgta ... attgttacagGTACCACGCGGGGCCCCTGCTGCAGAATGCTACAAGATGGCTCTTGCTCAT
EST: CGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAG GTACCACGCGGGGCCCCTGCTGCAGAATGCTACAAGATGGCTCTTGCTCATEST: gi|67020588|gb|CO449337.1|CO449337
genomic: CGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAGgtactgtgta ... attgttacagGTACCACGCGGGGCCCCTGCTGCAGAATGCTACAAGATGGCTCTTGCTCAT
EST: CGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAG GTACCACGCGGGGCCCCTGCTGCAGAATGCTACAAGATGGCTCTTGCTCATEST: gi|149039486|gb|EE046628.2|EE046628
genomic: CGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAGgtactgtgta ... attgttacagGTACCACGCGGGGCCCCTGCTGCAGAATGCTACAAGATGGCTCTTGCTCAT
EST: CGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAG GTACCACGCGGGGCCCCTGCTGCAGAATGCTACAAGATGGCTCTTGCTCATEST: gi|78179500|gb|DV549873.1|DV549873
genomic: CGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAGgtactgtgta ... attgttacagGTACCACGCGGGGCCCCTGCTGCAGAATGCTACAAGATGGCTCTTGCTCAT
EST: CGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAG GTACCACGCGGGGCCCCTGCTGCAGAATGCTACAAGATGGCTCTTGCTCATEST: gi|149075857|gb|EE164402.2|EE164402
genomic: CGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAGgtactgtgta ... attgttacagGTACCACGCGGGGCCCCTGCTGCAGAATGCTACAAGATGGCTCTTGCTCAT
EST: CGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAG GTACCACGCGGGGCCCCTGCTGCAGAATGCTACAAGATGGCTCTTGCTCAT
genomic: CGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAGgtactgtgta ... attgttacagGTACCACGCGGGGCCCCTGCTGCAGAATGCTACAAGATGGCTCTTGCTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCCATCACAACCAATTGATCTCAGCGCTCTCGAGGGTCCTGGAGCGGCGAAGCAAGCTGCTCGCCCTCCAGCACCTACTGCTGTGCGGCCTGGCCAGgtactgtgtatttcctgaagagatctgatgggtctggactgctttcctagtttcctagacaccgtattccattgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT