Sequence
atgc intronic sequence ATGC exonic sequenceCGTAATCTTGTGAAGTTGTTTGGTTTTTGCCTTGAGGGAAATAAACCACTTTTGGTTTATGAGTACATGGAGAGTGGAAGCCTTGATAAAGCATTGTTTGgtatcaaccatttcattcagtttatccagcggcgactagtctaggactcttatataaatctgacatctgaaatgttcattggcatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os04g52606.2 (Oryza sativa), 5'ss of exon 18
CGTAATCTTGTGAAGTTGTTTGGTTTTTGCCTTGAGGGAAATAAACCACTTTTGGTTTATGAGTACATGGAGAGTGGAAGCCTTGATAAAGCATTGTTTGgtatcaaccatttca-ttcagtttatccagcggcgactagtctaggact--------cttatataaatctgacatctgaaatgttcattggcatgcag
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CGTAATCTTGTGAAGTTGTATGGTTGTTGCCTTGAAAGCAATAACCCACTTTTGGTTTATGAGTACATGGATAATGGAAGCCTTGATAAAGCACTGTTTGgtacaagttatttcaatttgatgcaactggtattctgagaacttggatttatcgtagtctatagagacctaaaagttcaatcctacatttgcag----
upper sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os04g52614.1 (Oryza sativa), 5'ss of exon 17
CGTAATCTTGTGAAGTTGTTTGGTTTTTGCCTTGAGGGAAATAAACCACTTTTGGTTTATGAGTACATGGAGAGTGGAAGCCTTGATAAAGCATTGTTTGgtatcaaccatttca-ttcagtttatccagcggcgac-tagtctaggactcttata---ta-aatctgacatctgaaatgttcattggcatgcag
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CGTAATCTCGTGAAGTTGTATGGTTGCTGCCTTGAAGGCAATAATCCACTGCTGGTTTATGAGTACATGGAAAACGGAAGCCTTGATAAAGCATTGTTTGgtacgagcaatttcagtttgatgcaactgatattttcataattcaggtttatcatagtctacaacgtaaaagcttaacccttcatttgcag----
upper sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os04g52640.1 (Oryza sativa), 5'ss of exon 21
CGTAATCTTGTGAAGTTGTTTGGTTTTTGCCTTGAGGGAAATAAACCACTTTTGGTTTATGAGTACATGGAGAGTGGAAGCCTTGATAAAGCATTGTTTGgtatcaaccatttcattcagtttatccagcggcgactagtctaggactcttatataaatctgacatctgaaatgttcattggcatgcag----
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CGTAATCTCGTGAAGTTGTATGGTTGTTGCCTTGAAGGCAATAATCCACTGCTGGTTTATGAGTATATGGAGAATGGGAGCCTTGATAAAGCACTGTTCGgtacaatttatttcatt---ttgatgcaactgggattctgataatttattgttagtagatagaaacataaaa-gttcaatcctgtatttctag
upper sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os04g52600.1 (Oryza sativa), 5'ss of exon 21
CGTAATCTTGTGAAGTTGTTTGGTTTTTGCCTTGAGGGAAATAAACCACTTTTGGTTTATGAGTACATGGAGAGTGGAAGCCTTGATAAAGCATTGTTTGgtatcaaccatttca-ttcagtttatccagcggcgactagtctaggactcttatat----aaatctgacatctgaaatgttcattggcatgcag
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CGTAATCTTGTGAAGTTATATGGTTGCTGCCTTGAAGGCAATAATCCACTGCTGGTTTATGAGTACATGGAAAATGGAAGCCTTGATAAAGCACTCTTTGgtacaagctatttcagtttgatgcaattgggattttataatttaggtttatcatagtctgtaacctaaaatctaaaccctccatttgcag----
upper sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os04g52630.1 (Oryza sativa), 5'ss of exon 19
---------------------------------------------------------------------------------------------------CGTAATCTTGTGAAGTTGTTTGGTTTTTGCCTTGAGGGAAATAAACCACTTTTGGTTT-ATGAGTACATGGAGAGTGGAAGCCTTGATAAAGCATTGTTTGgtatcaaccatttca-ttcagtttatccagcggcgactagtctaggactcttatataaatct---gacatctgaaatgttca----ttggcatgcag
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GATGGAAGGGTAGTGGCAGTAAAACAGCTATCTCAGACATCTAATCAAGGGAAACAACAATTTGCGACTGAAATAGAAACTATATCTCGAGTGCAACACCgtaatcttgtgaagttgtatggttgctgccttgaaggcaaacatccactgctggttttatgagtacttggagaatggaagccttgataaagcactatttggtacaagttatttcagtttgatatggctgagattctgtgaactcagatttat-tattagtctatagagagctaaaaagcttaacccttcatttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|56691603|gb|CX129506.1|CX129506EST: TTTGGTTTATGAGTACATGGAGAGTGGAAGCCTTGATAAAGCATTGTTTG GAAATGGAAGATTGAACTTGAATTGGTCAACACGATATAAAATATGCTTGG
genomic: TTTGGTTTATGAGTACATGGAGAGTGGAAGCCTTGATAAAGCATTGTTTGgtatcaacca ... tggcatgcagGAAATGGAAGATTGAACTTGAATTGGTCAACACGATATAAAATATGCTTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTAATCTTGTGAAGTTGTTTGGTTTTTGCCTTGAGGGAAATAAACCACTTTTGGTTTATGAGTACATGGAGAGTGGAAGCCTTGATAAAGCATTGTTTGgtatcaaccatttcattcagtttatccagcggcgactagtctaggactcttatataaatctgacatctgaaatgttcattggcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG