1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcacgtttctcgctgattttttttagacatgcttatttgcaatgcgtcgatgacgagtcaggaacttcggtgattgcag
species | Zea mays |
transcript | GRMZM2G104377_T03 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAG GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTTEST: gi|211344263|gb|FL079002.1|FL079002
genomic: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
EST: CCATTGTTCTAATACTAAGGCTATTCAGGATGAAG GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTTEST: gi|17921450|gb|BM259101.1|BM259101
genomic: CCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
EST: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAG GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTTEST: gi|5714191|gb|AI944176.1|AI944176
genomic: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
EST: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAG GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTTEST: gi|60351693|gb|DN218666.1|DN218666
genomic: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
EST: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAG GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTTEST: gi|60355764|gb|DN222737.1|DN222737
genomic: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
EST: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAG GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTTEST: gi|17921770|gb|BM259421.1|BM259421
genomic: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
EST: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAG GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTTEST: gi|116820813|gb|EC864069.1|EC864069
genomic: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
EST: ACCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAG GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
genomic: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcacgtttctcgctgattttttttagacatgcttatttgcaatgcgtcgatgacgagtcaggaacttcggtgattgcag
- - GAGATG
- - - - - - - - - - - - - - - - - - AGGATG