Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTGGATTAAAAATGGTGTCCACATCGGGAGTGGCAGAAAATATAAGGATTCCTATTTTCTTCAGGCGCAAGTAATGTGCTACTACAACGTATAACAGgtgctttctccttatctgtgttatataaatgtcataaatattcatgtaatcaaatattgaccaagttgtatcctaacatctgtgttttccagtataaaga...

Basic information

species Zea mays
transcript GRMZM2G101250_T02
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101250_T02 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os04g09860.3 (Oryza sativa), 5'ss of exon 20
AGATTGGATTAAAAATGGTGTCCACATCGGGAGTGGCAGAAAATATAAGGATTCCTATTTTCTTCAGGCGCAAGTAATGTGCTACTACAACGTATAACAGgtg---ctttctccttatctgtgttatataaatgtc---ataaatattcatgtaatca-aatattgaccaagttgtatcctaacatctgtgttttccagtataaaga
|||||||  |||||||||||||||||| |||||||| |||||||||| |||||| |||||||||||||| || | |||||| ||||||||   |||||||||    ||    |||  |  | |  || ||  ||||    |    |||    |  ||| |   |     | ||| | || |    ||  | | |     ||||    
AGATTGGGCTAAAAATGGTGTCCACATAGGGAGTGGGAGAAAATATAGGGATTCTTATTTTCTTCAGGCACAGGCAATGTGTTACTACAATTCATAACAGgtatctctccaccctggtgagcgccatgtacttgtccctgtcgtcatttccatgctcagagcctcagttatgttatttcttgg--tcaat-tctgtagttata----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211312443|gb|FL348211.1|FL348211
EST:     AATGTGCTACTACAACGTATAACAG                         TATCTTATTTCCGAGCTACACACGAAGACTTGCACTTATACAGGTTGTTCG
genomic: AATGTGCTACTACAACGTATAACAGgtgctttctc ... attattacagTATCTTATTTCCGAGCTACACACGAAGACTTGCACTTATACAGGTTGTTCG
EST: gi|113701052|gb|EE678556.1|EE678556
EST:     ATTCCTATTTTCTTCAGGCGCAAGTAATGTGCTACTACAACGTATAACAG                         TATCTTATTTCCGAGCTACACACGAAGACTTGCACTTATACAGGTTGTTCG
genomic: ATTCCTATTTTCTTCAGGCGCAAGTAATGTGCTACTACAACGTATAACAGgtgctttctc ... attattacagTATCTTATTTCCGAGCTACACACGAAGACTTGCACTTATACAGGTTGTTCG
EST: gi|166554660|gb|EG170288.1|EG170288
EST:     ATTCCTATTTTCTTCAGGCGCAAGTAATGTGCTACTACAACGTATAACAG                         TATCTTATTTCCGAGCTACACACGAAGACTTGCACTTATACAGGTTG
genomic: ATTCCTATTTTCTTCAGGCGCAAGTAATGTGCTACTACAACGTATAACAGgtgctttctc ... attattacagTATCTTATTTCCGAGCTACACACGAAGACTTGCACTTATACAGGTTG