1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
CCTGAGGTTGTCGAGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCGAAGGAGgtaaggtcacaacagatctcacattgtatgcatctgtggtgctgctctgttttcatgaacctatgaacggtcaactgtggtccaacagaaggccgctttgtgcttattgacagatcaggttttttttttcgtatgcttattactagtaatctggtcatagattcttactcccaagtcgtttcttag
species | Zea mays |
transcript | GRMZM2G070045_T01 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCCAAGGAG GTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAACEST: gi|67012338|gb|CO441087.1|CO441087
genomic: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCGAAGGAGgtaaggtcac ... cgtttcttagGTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAAC
EST: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCCAAGGAG GTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAACEST: gi|60398228|gb|DN231044.1|DN231044
genomic: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCGAAGGAGgtaaggtcac ... cgtttcttagGTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAAC
EST: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCGAAGGAG GTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAACEST: gi|9733553|gb|BE512185.1|BE512185
genomic: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCGAAGGAGgtaaggtcac ... cgtttcttagGTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAAC
EST: ATAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCCAAGGAG GTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAACEST: gi|108953640|gb|EC364817.1|EC364817
genomic: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCGAAGGAGgtaaggtcac ... cgtttcttagGTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAAC
EST: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCCAAGGAG GTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAACEST: gi|37375400|gb|CF624134.1|CF624134
genomic: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCGAAGGAGgtaaggtcac ... cgtttcttagGTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAAC
EST: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCCAAGGAG GTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAACEST: gi|67019171|gb|CO447920.1|CO447920
genomic: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCGAAGGAGgtaaggtcac ... cgtttcttagGTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAAC
EST: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCCAAGGAG GTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAACEST: gi|67016798|gb|CO445547.1|CO445547
genomic: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCGAAGGAGgtaaggtcac ... cgtttcttagGTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAAC
EST: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCCAAGGAG GTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAACEST: gi|56691655|gb|CX129558.1|CX129558
genomic: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCGAAGGAGgtaaggtcac ... cgtttcttagGTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAAC
EST: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCCAAGGAG GTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAAC
genomic: AGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCGAAGGAGgtaaggtcac ... cgtttcttagGTTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTTGTGGATGGCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGAGGTTGTCGAGAAGCTTGTGGCAATGCGGGAAGGCATTCCAAAAAAGGAAGCGAAGGAGgtaaggtcacaacagatctcacattgtatgcatctgtggtgctgctctgttttcatgaacctatgaacggtcaactgtggtccaacagaaggccgctttgtgcttattgacagatcaggttttttttttcgtatgcttattactagtaatctggtcatagattcttactcccaagtcgtttcttag
- - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG