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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactcttactcctgatgttggtatttcttaaggtggcataccttaatattaaatttctcaacatggcatgcattgatattaaattttctttatattcatag

Basic information

species Zea mays
transcript GRMZM2G057576_T01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 20
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactcttactcctgatgttggtatttcttaaggtggcataccttaatattaaatttctcaacatggcatgcattgatattaaattttctttatattca-tag
| ||||| || ||||| |||||||||||||||||| | ||||| |||||||||||||| |||||||| ||||||||||||||| | |||||||| ||||||||||||    |||||||||||||| ||| |   |||            ||| ||    | || ||| ||||   | || ||||      ||||||| |||||  ||
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTTATTTGAGTTCCAGgtagttaac--tactcctgatgttgatatgtgcgaag-----------caattttg---tccttaacgtggcgcaccttaatatcg----ttctttacattcaacag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 20
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactcttactcctgatgttggtatttcttaaggtggcataccttaatattaaatttctcaacatggcatgcattgatattaaattttctttatattca-tag
| ||||| || ||||| |||||||||||||||||| | ||||| |||||||||||||| |||||||| ||||||||||||||| | |||||||| ||||||||||||    ||| |||||||||| ||| |   |||            ||| ||    | || ||| ||||   | || ||||      ||||||| |||||  ||
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTTATTTGAGTTCCAGgtagttaac--tacacctgatgttgatatgtgcgaag-----------caattttg---tccttaacgtggcgcaccttaatatcg----ttctttacattcaacag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
lower sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 20
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactcttactcctgatgttggtatttcttaaggtggcataccttaatattaaatttctcaacatggcatgcattgatattaaattttctttatatt-catag
||||||| ||  | || |||||||| ||||| ||| | ||||| ||||||||||| ||||| || || ||||||||||||||  | || |||||||||||||| ||  |  |  |      ||    ||  | | || |  |         |  |  | || |     |  ||   ||||  |||   |||  | | | ||  | ||
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAATCCTATGAAGGACTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttgacttttt--tttttcaattattgtaattttttttgttctgtcttgtaaag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 20
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactcttactcctgatg-----ttggtatttcttaaggtggcataccttaat--attaaatttctcaacatggcatgcattgatattaaattttctttatattcatag-------
||| ||| ||| | || |||||||| ||||||||| | ||||| ||||| |  || ||||| || || ||||||||| | ||||| || |||||||||||||| || || | | |    |        | || |||||   |||   | |||| | |  ||| |  |  |   ||  | ||    || |  |  || ||| |   | | |||        
ATTGTGAGCAATTGGGTGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAAGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaatt-ctttcatttggaaaaaaaaacttgtttttctgttggtaatagacctcatttaattgagatattatccaatgtattt-ctgctgatgtatgttcctctaaataatatggaacag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 19
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactcttactcctgatgttggtatttcttaaggtggcataccttaatattaaatttctcaacatggcatgcattgatattaaattttctttatattcatag-----------
||| ||||||| | || |||||||||||||||||  | ||||| || ||||  || ||||| || || || |||||| ||||||| |||||||||||||||||   ||||||  || || | || | | |  ||  | |||   ||      ||  ||||| | ||   |  ||    || ||| |  |  | ||| | | | |             
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgta---actctt--tcatgtttttagaactgttttggctggtggacaa-gtgatgcaatttgtaaaggggatattgtctgctatcagctaatatttttttccctgaacttgggacag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 19
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactct-tactcctgatgttggtatttctta-----aggtggcatacctta-atattaaatttctcaacatggcatgcattgatattaaattttctttatattcatag---
||| ||||||| | || |||||||||||||||||  | ||||| || ||||  || ||||| || || || |||||| ||||||| ||||||||||||||||| || ||   |  |  |     || | |  ||       | |||       ||  | |    || |      ||  |||    | |||||   ||  |  || | |        
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaattccttcatttttatagaactgttttggctggtgggcaagtgatgccatttgtaaaggggatgttgtctgatatcatcagctaatatttttttccccctaaacttgggacag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 20
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactcttactcctgatgt-tggtatttcttaaggtggcatacc-ttaatattaaatttctcaacatggcatgcattgatattaaattttctttatat-tcatag--
||| |||||| || || || ||||| ||||| ||| | ||||| |||||||| || ||||| || || ||||||||||||||  | ||||||||||| ||||| ||  |   |  |    |   ||  ||   ||       || ||  ||  | ||  | || || |  |    |   || || ||   ||||  || | | |  ||   
ATTGTGAACAGCTCGGTGTAGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaaacaatgtacatgacatcagttctccacacaaactattgcttttctagttttctatttac--ttttttaattttggctttttattctgtcttgtacag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
lower sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 18
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactct----tactcctgatgttggtatttcttaaggtggcataccttaatattaaatttctcaacatggcatgcattgatattaaattttctttatattcatag
||| |||||| || || |||||||| ||||| ||| | ||||| |||||||| || ||||| || || ||||||||||||||  | ||||||||||| ||||| ||  |       | |    |||     | ||||  |       ||      |   |  | | |  || |  |     |||   ||  ||| | | | | | ||   
ATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaagcaatgtacatgacaccagttctctacacaaactattgcttttcaagttctatttacttttctaattttggctttttattctgtct-tgtacag--

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
lower sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 20
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactcttactcctgatg----ttggtatttcttaaggtggcataccttaat--attaaatttctcaacatggcatgcattgatattaaattttctttatattcatag-------
||| ||| ||| | || |||||||| ||||||||| | ||||| ||||| |  || |||||||| || ||||||||| | ||||| || |||||||||||||| || || | | |    |       | || |||||   |||     |||| | |  ||| |  |  |   |   | ||    || |  |  || ||| |   | | |||        
ATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaatt-ctttcatttggaaaaaaaacttgtttttctgttggtaattgacctcattttattgagatattgtccgatgtattt-ctgctgatgtatgttcctctaaataatatggaacag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
lower sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 20
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactcttactcctgatgttggtatttcttaaggtggcataccttaatattaaatttctcaacatggcatgcattgatattaaattttctttatatt-catag-----
||||||| ||  | || |||||||| ||||| ||| | ||||||||||||||||| ||||| ||  | ||||||||||||||  | || |||||||||||||| ||  |  |  |      ||    ||  | | || |  |         |  |  | |  |     |  | | || |  |  ||| |||| ||| |  |   | |     
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAACAATTCAAATCCTATGAAGGATTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttcactgttttttttttctttcaatttttgtaatttttttttgttctgtcttgtaaag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 20
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactcttactcctgatgttggtatttcttaaggtggcataccttaatattaaatttctcaacatggcatgcattgatattaaattttctttatattcatag--
||||||||||  | || ||||| || || |||||| | ||||| || ||||| |||||||| ||  | |||||||||||||| || ||||||||||||||||| ||       ||  | ||    |         |     |  || ||||| ||||   | |     | | ||   ||  ||||   |   ||| || || | |   
ATTCTGAACAGTTGGGTGTTGAGGCATGTATAAAACTGTTTGAGCAGTTCAAGTCTTATGAAGGATTATACTTTTTCTTGGGGTCATATTTGAGCTCCAGgtattt-------cttttaataaaag---------aaaaaactgactttaattttaagcatttt----ttgtatattttcttatttt-tcaccttcattttgagacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32928656|gb|CF033468.1|CF033468
EST:     AAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAG                         TGAGGATCCAGATATCCATTTCAAATACATAGAAGCAGCTGCAAGAACTGG
genomic: AAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactc ... atattcatagTGAGGATCCAGATATCCATTTCAAATACATAGAAGCAGCTGCAAGAACTGG
EST: gi|32929052|gb|CF033864.1|CF033864
EST:     AAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAG                         TGAGGATCCAGATATCCATTTCAAATACATAGAAGCAGCTGCAAGAACTGG
genomic: AAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactc ... atattcatagTGAGGATCCAGATATCCATTTCAAATACATAGAAGCAGCTGCAAGAACTGG