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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTCAGgtaaatatactttctcatcaagttctaggcaatgtttgtttgtcttctaatttttaagttattttgatattgctatttaattggatggtgtctactgaac...

Basic information

species Zea mays
transcript GRMZM2G056393_T02
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G056393_T02 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 5'ss of exon 19
GTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTCAGgtaaatatactttctcatcaagttctaggcaatgtttgtttgtcttctaatttttaagttattttgatattgctatttaattggatggtgtctactgaac-----
||||| ||||||||||||||||||||| |||||||| |||| |||  ||| ||||| || ||  | |      |   | |    |   ||| |||   |  | | || ||  | |    || | |||| |||  ||   |       |||   |     
GTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACACAGgtcaa-atgttattcttctatactttgtctatcttttattt---tattgacttatatat-acccagaaaatgctctttgttttagtcagtcaaactactctgtga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32933717|gb|CF038529.1|CF038529
EST:     CGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGTGACTCAG                         GGGAAAGGTGAATTTGCGATGGAGTA
genomic: CGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTCAGgtaaatatac ... tgtcctgcagGGGAAAGGTGAATTTACGATGGAGTA
EST: gi|32932818|gb|CF037630.1|CF037630
EST:     CGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGTGACTCAG                         GGGAAAGGTGAATTTACGATGGAGT
genomic: CGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTCAGgtaaatatac ... tgtcctgcagGGGAAAGGTGAATTTACGATGGAGT
EST: gi|33093919|gb|CF053913.1|CF053913
EST:     CGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGTGACTCAG                         GGGAAAGGTGAATTTACGATGGAGTACCT
genomic: CGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTCAGgtaaatatac ... tgtcctgcagGGGAAAGGTGAATTTACGATGGAGTACCT
EST: gi|69351603|gb|DR452190.1|DR452190
EST:     CGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTCAG                         GGGAAAGGTGAATTTACGATGGAGTACCTGGAGCATAATGTTGTATCGCAG
genomic: CGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTCAGgtaaatatac ... tgtcctgcagGGGAAAGGTGAATTTACGATGGAGTACCTGGAGCATAATGTTGTATCGCAG