Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATATCTACAACGAGAAAGGCAAGGGTCTGCTCGTCTAGAGAATTTTGCTTCTGCACTCGAACTGATTGGACAAAAGgttctggtcaatatatcacaaagttttatggtttattctgcttatcggtgtaaatttattacatctggttgtttctcatgcccctttgttctgtccatacgaatgaagtagttttggttttaatctccttgaaacttatttatcatgtacattttggtattctgatgacag

Basic information

species Zea mays
transcript GRMZM2G052750_T01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052750_T02 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os02g54500.1 (Oryza sativa), 5'ss of exon 19
GAATATCTACAACGAGAAAGGCAAGGGTCTGCTCGTCTAGAGAATTTTGCTTCTGCACTCGAACTGATTGGACAAAAGgttctggtcaatatatcacaaagttttat--ggtttattctgcttatcggtgtaaatt--tattacatctggttgtttctcatgcccctttgttctgtccatacgaatgaagtagttttggttttaatctccttgaaacttatttatcatgtacattttggtattctgatgacag
|||||||| || |||||||||| |||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| || || || | | ||  |||  ||||   || | |||   |||   |   |  ||  | | | |   |      |  ||||    ||| || ||||                                                                            
GAATATCTTCAGCGAGAAAGGCTAGGGTCTGCTCGACTAGAGAATTTTGCATCTGCACTTGAACTGATTGGACAAAAGgt-ctcgttaacaaaccatgaagcattatttagtgtgttccatttagtagcaaattttcctgtaaaaaaagaaaaaattacatgatttttt-ttttgtcttg-------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87152673|gb|DY397462.1|DY397462
EST:     CTGCTCGTCTAGAGAATTTTGCTTCCGCACTCGAACTGATTGGACAAAAG                         CTCCAAATGGATACACTGCAAAGTCGACTTGATGCAGAGTTCCTTCTAGCT
genomic: CTGCTCGTCTAGAGAATTTTGCTTCTGCACTCGAACTGATTGGACAAAAGgttctggtca ... ctgatgacagCTCCAAATGGATACACTGCAAAGTCGACTTGATGCAGAGTTCCTTCTAGCT
EST: gi|211446884|gb|FL341663.1|FL341663
EST:     CTGCTCGTCTAGAGAATTTTGCTTCTGCACTCGAACTGATTGGACAAAAG                         CTCCAAATGGATACACTGCAAAGTCGACTTGATGCAGAGTTCCTTCTAGCT
genomic: CTGCTCGTCTAGAGAATTTTGCTTCTGCACTCGAACTGATTGGACAAAAGgttctggtca ... ctgatgacagCTCCAAATGGATACACTGCAAAGTCGACTTGATGCAGAGTTCCTTCTAGCT
EST: gi|211446492|gb|FK979151.1|FK979151
EST:     CTGCTCGTCTAGAGAATTTTGCTTCTGCACTCGAACTGATTGGACAAAAG                         CTCCAAATGGATACACTGCAAAGTCGACTTGATGCAGAGTTCCTTCTAGCT
genomic: CTGCTCGTCTAGAGAATTTTGCTTCTGCACTCGAACTGATTGGACAAAAGgttctggtca ... ctgatgacagCTCCAAATGGATACACTGCAAAGTCGACTTGATGCAGAGTTCCTTCTAGCT
EST: gi|32867742|gb|CF007424.1|CF007424
EST:     CTGCTCGTCTAGAGAATTTTGCTTCCGCGCTCGAACTGATTGGACAAAAG                         CTCCAAATGGATACACTGCAAAGTCGACTTGATGCAGAGTTCCTTCTAGCT
genomic: CTGCTCGTCTAGAGAATTTTGCTTCTGCACTCGAACTGATTGGACAAAAGgttctggtca ... ctgatgacagCTCCAAATGGATACACTGCAAAGTCGACTTGATGCAGAGTTCCTTCTAGCT
EST: gi|211253319|gb|FL352230.1|FL352230
EST:     CTGCTCGTCTAGAGAATTTTGCTTCTGCACTCGAACTGATTGGACAAAAG                         CTCCAAATGGATACACTGCAAAGTCGACTTGATGCAGAGTTCCTTCTAGCT
genomic: CTGCTCGTCTAGAGAATTTTGCTTCTGCACTCGAACTGATTGGACAAAAGgttctggtca ... ctgatgacagCTCCAAATGGATACACTGCAAAGTCGACTTGATGCAGAGTTCCTTCTAGCT
EST: gi|32868501|gb|CF008183.1|CF008183
EST:     CTGCTCGTCTAGAGAATTTTGCTTCCGCGCTCGAACTGATTGGACAAAAG                         CTCCAAATGGATACACTGCAAAGTCGACTTGATGCAGAGTTCCTTCTAGCT
genomic: CTGCTCGTCTAGAGAATTTTGCTTCTGCACTCGAACTGATTGGACAAAAGgttctggtca ... ctgatgacagCTCCAAATGGATACACTGCAAAGTCGACTTGATGCAGAGTTCCTTCTAGCT