1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgccttgctagtctccagagttctgaagttttgatagactgttcacatcagttgtgcttatattctctttgaaaaaaactgaattgcacagacagcaaaattttatatccattgtctcatctcatctgcag
species | Zea mays |
transcript | GRMZM2G047894_T01 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAAEST: gi|78021557|gb|DV489944.1|DV489944
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAAEST: gi|71428422|gb|DR809472.1|DR809472
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTTTCAGTCAAG TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAAEST: gi|78022411|gb|DV490798.1|DV490798
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAAEST: gi|32934739|gb|CF039551.1|CF039551
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAAEST: gi|37387638|gb|CF631017.1|CF631017
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAAEST: gi|37391643|gb|CF633065.1|CF633065
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAAEST: gi|71325384|gb|DR799369.1|DR799369
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTTTCAGTCAAG TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAAEST: gi|18385140|gb|BM418339.1|BM418339
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAAEST: gi|17970259|gb|BM277022.1|BM277022
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAAEST: gi|24763373|gb|CA398549.1|CA398549
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAAEST: gi|12968368|gb|BG265314.1|BG265314
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAAEST: gi|113702249|gb|EE679753.1|EE679753
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAAEST: gi|32850672|gb|CD990353.1|CD990353
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgccttgctagtctccagagttctgaagttttgatagactgttcacatcagttgtgcttatattctctttgaaaaaaactgaattgcacagacagcaaaattttatatccattgtctcatctcatctgcag
- - - - - - - - - - - - - - TGGTGG