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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGATCTTTCTCCACATGTACCACTATATAAAGTCATGGAAGGGAATGAGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTGgtatgatgtcggctatctttctattttattatgcttttgctgttcttgtacttgggctgggcttcttgtactcagtccactttggaccttttcctcctta...

Basic information

species Zea mays
transcript GRMZM2G047310_T02
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047310_T01 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA02G32100.1 (Glycine max), 5'ss of exon 17
TGAAGATCTTTCTCCACATGTACCACTATATAAAGTCATGGAAGGGAATGAGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTGgtatgatgtcggctatctttctattttattatgcttttgctgttcttgtacttgggctgggcttcttgtactcagtccactttggaccttttcctcctta---
 || || || |||||||||||||||||||||||||| |  ||||||||||| || ||||| ||||  || |||||||| |||||| |  ||||| || |||||||         ||     | |    || |   |||  |  |||| || ||   ||  |    ||  | |   |  ||| |  | ||||  ||    |   
GGAGGAACTATCTCCACATGTACCACTATATAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCATGGGATCATGCAAAAGCTATGgtatgtacctaaacatgaaaatctccctttttctgttttgttctcttttatttt--ctaagtaaatta-attatttttactctttatctttagctgtaaagtt

upper sequence: GRMZM2G047310_T01 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA19G32010.1 (Glycine max), 5'ss of exon 19
TGAAGATCTTTCTCCACATGTACCACTATATAAAGTCATGGAAGGGAATGAGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTGgtatgatgtcggctatctttcta---ttttattatgcttttgctgttcttgtacttgggctgggc-ttcttgtactcagtccactttggaccttttcctcctta
 ||||  || ||||| |||||||||||||| ||||| |  ||||||||||| || ||||| ||||  || ||||||||||||||| |  ||||| || ||||| | ||     || |||       |   ||| |  |||| ||||| |  ||       ||  | ||||   |||   |   | |||   | | |     |  
GGAAGGACTATCTCCTCATGTACCACTATACAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAAGCTATGgtacg-tgctaa-taccttgaggaactccaatttttgttttcctgttttcttaaaaaaaatgttcattctcacactttttaatcattgtggcctgtaaagtt--

upper sequence: GRMZM2G047310_T01 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA03G29280.1 (Glycine max), 5'ss of exon 18
TGAAGATCTTTCTCCACATGTACCACTATATAAAGTCATGGAAGGGAATGAGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTGgtatgatgtcggctatctttctattttattatgcttttgctgttcttgtacttgggctgggc-ttcttgtactcagt--ccactttggaccttttcctcctta
 || |  || ||||| |||||||||||||| ||||| |  ||||||||||| || ||||| ||||  || ||||||||||||||| | |||||| || ||||| | |||        |    |  |   | |  |||| || || |  ||       ||  | ||||   |||   |   || | ||| |  |    |  |  
GGAGGGACTATCTCCTCATGTACCACTATACAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATACAAAAGCTATGgtacg-tgttaaaaccttaaggaactccatttttttttccttttttcttaaaaaaaatgttcattctcacactttttaatcattgtggccggtaaagttat--

upper sequence: GRMZM2G047310_T01 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA10G21350.1 (Glycine max), 5'ss of exon 18
TGAAGATCTTTCTCCACATGTACCACTATATAAAGTCATGGAAGGGAATGAGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTGgtatg-atgtcggc-tatctttctattttattatgcttttgctgtt-cttgtacttgggctgggcttcttgtactcagtccactttggaccttttcctcctta
 || |  || |||||||||||||||||||||||||| |  ||||||||||| || ||||| ||||  || |||||||| |||||| |  ||||| || ||||||| |   |  | ||    | |   || || || ||| | |||  ||| || ||    || |    ||  | |   | |||| |  | |||   ||     
GGAGGGGCTATCTCCACATGTACCACTATATAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCATGGGATCATGCAAAAGCTATGgtatgtaccacaacataaaaatgtccctttttctggttt-gttgtcacttctattttctttgagaaaatta-attattttcactctttatcttcagctgtaa-

upper sequence: GRMZM2G047310_T01 (Zea mays), 5'ss of exon 17
lower sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 19
TGAAGATCTTTCTCCACATGTACCACTATATAAAGTCATGGAAGGGAATGAGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTGgta--tgatgtcg-gctatctttctattt---tattatgcttttgctgttcttgtacttgggc--tgggcttcttgtactcagtccactttggaccttttcctcctta-------------------------------
 ||||   |   |||  | || ||| | || ||| |||  |||||||| || |||||||||||||  || |||||||||||||||  ||| ||| || | |||  |||  | | | |        ||||   || |||   |       |||     ||      |||  ||| | ||||   ||   ||     ||  |     |||                               
GGAAGGCTTGCATCCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCTTCACCACTTACTTTTCTTGGGATGCCACTAAAGCTATCgtaagtgacttagtgttgaagagggatttagataatataactagataactctgaatgttacctcatggatttcctttactgtttctctttcttttctccttgaatttacctttcttctgttttaaacattgggatatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71439549|gb|DR820599.1|DR820599
EST:     AGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTG                         GTTCATGGAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTTGGATTGCG
genomic: AGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTGgtatgatgtc ... ctttgcacagGTTCATGGAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTT-GGATTGCG
EST: gi|101399213|gb|EB821480.1|EB821480
EST:     AGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTG                         GTTCATGGAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGT
genomic: AGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTGgtatgatgtc ... ctttgcacagGTTCATGGAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGT
EST: gi|13557985|gb|BG549341.1|BG549341
EST:     TAACACAAAATCTTTG                         GTTCATGGAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGT
genomic: TAACACAAAATCTTTGgtatgatgtc ... ctttgcacagGTTCATGGAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGT
EST: gi|211011729|gb|FL062982.1|FL062982
EST:     AGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTG                         GTTCATGGAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGT
genomic: AGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTGgtatgatgtc ... ctttgcacagGTTCATGGAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGT
EST: gi|211106297|gb|FL022815.1|FL022815
EST:     CCATGCTTCCTTCAAGACGTACTTTTCTTGGGATAACACAAAAATCTTTG                         GTTCATGGAAATTCCTTCCAGAAGAAACTC
genomic: CCATGCTTC-TTCAAGACGTACTTTTCTTGGGATAACACAAAA-TCTTTGgtatgatgtc ... ctttgcacagGTTCATGGAAATTCCTTCCAGAAGAAACTC
EST: gi|5816386|gb|AI987302.1|AI987302
EST:     AGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTG                         GTTCATGGAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGT
genomic: AGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTGgtatgatgtc ... ctttgcacagGTTCATGGAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGT
EST: gi|93281335|gb|EB673599.1|EB673599
EST:     AGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTG                         GTTCATGGAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGT
genomic: AGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTGgtatgatgtc ... ctttgcacagGTTCATGGAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGT
EST: gi|149103859|gb|EE289270.2|EE289270
EST:     AGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTG                         GTTCATGGAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGT
genomic: AGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTGgtatgatgtc ... ctttgcacagGTTCATGGAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGT
EST: gi|211541599|gb|FL022802.1|FL022802
EST:     AGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTG                         GGTCATGGAAATTCCTTCCA
genomic: AGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTGgtatgatgtc ... ctttgcacagGTTCATGGAAATTCCTTCCA