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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAGCTGCATTTCCAACTCAATCAACAGCGCCAGCACCAGTATGGCTCTTCCGTAGATGCAAATGATCATCCTCAACACCTTCTAAATCATCTCTCGCAgtaagactatttttactattcttttcagctttgttaggttgtgcctgcaagtccaaatatttgggagctacgtatttagtaacaaatgcagaatgcttgt...

Basic information

species Zea mays
transcript GRMZM2G036872_T01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036872_T02 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os07g46450.2 (Oryza sativa), 5'ss of exon 13
CAGAGCTGCATTTCCAACTCAATCAACAGCGCCAGCACCAGTATGGCTCTTCCGTAGATGCAAATGATCATCCTCAACACCTTCTAAATCATCTCTCGCAgtaaga--ctatttttactattctt----ttcagctttgttaggttgtgcctgcaagtccaaatatttgggagctacgtatttagtaacaaatgcagaatgcttgt
| ||||| ||| |||||||||| || ||||| || || |||||||||||||  | |||||||||||||| |  |||||| |||| ||| |||||| | ||||||||  | || |||   ||  ||    ||||  |   ||  |||    |||   ||||| |  |   | |  | | ||   | || ||| |   |  ||||   
CGGAGCTCCATCTCCAACTCAACCAGCAGCGTCAACATCAGTATGGCTCTTTGGCAGATGCAAATGATCGTTATCAACATCTTCCAAACCATCTCCCACAgtaagaaaccatatttttcatagttaacattcatttcaattttgtttgaactgtg-gtccagac-tccagaacatccata---aatatcaagtattggctgctac-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18965228|gb|BM661464.1|BM661464
EST:     TCCGTAGATGCAAATGATCATCCTCAACACCTTCTAAATCATCTCTCGCA                         GAACATTGTCCAAACGGGATTTGATAGGAGCGTTGCTTTCTGTAATCAAGA
genomic: TCCGTAGATGCAAATGATCATCCTCAACACCTTCTAAATCATCTCTCGCAgtaagactat ... cttctaccagGAACATTGTCCAAACAGGATTTGATAGGAGCGTTGCTTTCTGTAATCAAGA
EST: gi|67039042|gb|CO465297.1|CO465297
EST:     TCCGTAGATGCAAATGATCATCCTCAACACCTTCTAAACCATCTCTCGCA                         GAACATTGTCCAAACGGGATTTGATAGGAGCGTTGCTTTCTGGTAATTCAA
genomic: TCCGTAGATGCAAATGATCATCCTCAACACCTTCTAAATCATCTCTCGCAgtaagactat ... cttctaccagGAACATTGTCCAAACAGGATTTGATAGGAGCGTTGCTTTCTG-TAAT-CAA
EST: gi|60337955|gb|DN204928.1|DN204928
EST:     TCCGTAGATGCAAATGATCATCCTCAACACCTTCTAAATCATCTCTCGCA                         GAACATTGTCCAAACAGGATTTGATAGGAGCGTTGCTTTCTGTAATCAAGA
genomic: TCCGTAGATGCAAATGATCATCCTCAACACCTTCTAAATCATCTCTCGCAgtaagactat ... cttctaccagGAACATTGTCCAAACAGGATTTGATAGGAGCGTTGCTTTCTGTAATCAAGA