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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTCCCTATATTCTTGAGGGGCTCCGCTCAAAGAATAACCGGACAAGGATAGAATGTGTTGATATTATTGGATACTTCATTGACCATCATGGGACTGAGgtctgaattgctatactcacccatttgccagttaggttgtgttgttttacttataggagatgtttgtttttgtcacgcag

Basic information

species Zea mays
transcript GRMZM2G009849_T02
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009849_T01 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os01g60040.2 (Oryza sativa), 5'ss of exon 37
ACTTCCCTATATTCTTGAGGGGCTCCGCTCAAAGAATAACCGGACAAGGATAGAATGTGTTGATATTATTGGATACTTCATTGACCATCATGGGACTGAGgtctgaattgctatactcacccatttgcc-----agttaggt--tgtgttgttttacttataggagatgtttgtttttgtcacgcag
 || || || ||| | ||||| || ||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||  | ||   | ||    ||  ||| ||      | ||  |  | | |||| |  | | |   |  | ||| |||    |  ||||
TCTCCCATACATTTTGGAGGGTCTACGCTCCAAGAATAACCGTACTAGGATAGAATGTGTTGATATTATTGGATATTTCATGGACCATCATGGGACTGAGgtacgtatcattctatcgtccttttttcccctcttgataattggtatattgtctctcgtttcacacttctttttttcctccttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28909669|gb|CB331043.1|CB331043
EST:     TAGAATGTGTTGATATTATTGGATACTTCATTGACCATCATGGGACTGAG                         GTTGGTGGGTTGATGAAAAACTTGCCATTTGTTGCAGCACTGACAGCAGAG
genomic: TAGAATGTGTTGATATTATTGGATACTTCATTGACCATCATGGGACTGAGgtctgaattg ... tgtcacgcagGTTGGTGGGTTGATGAAAAACTTGCCATTTGTTGCAGCACTGACAGCAGAG
EST: gi|4730484|gb|AI649650.1|AI649650
EST:     TAGAATGTGTTGATATTATTGGATACTTCATTGACCATCATGGGACTGAG                         GTTGGTGGGTTGATGAAAAACTTGCCATTTGTTGCAGCACTGACAGCAGAG
genomic: TAGAATGTGTTGATATTATTGGATACTTCATTGACCATCATGGGACTGAGgtctgaattg ... tgtcacgcagGTTGGTGGGTTGATGAAAAACTTGCCATTTGTTGCAGCACTGACAGCAGAG
EST: gi|211104805|gb|FL044858.1|FL044858
EST:     TTATTGGATACTTCATTGACCATCATGGGGACTGAGG                         GTTGGTGGGTTGATGAAAAACTTGCCATTTGTTGCAGCACTGACAGCAGA
genomic: TTATTGGATACTTCATTGACCATCAT-GGGACTGA-Ggtctgaattg ... tgtcacgcagGTTGGTGGGTTGATGAAAAACTTGCCATTTGTTGCAGCACTGACAGCAGA
EST: gi|166468088|gb|EG161712.1|EG161712
EST:     TAGAATGTGTTGATATTATTGGATACTTCATTGACCATCATGGGACTGAG                         GTTGGTGGGTTGATGAAAAACTTGCCATTTGTTGCAGC
genomic: TAGAATGTGTTGATATTATTGGATACTTCATTGACCATCATGGGACTGAGgtctgaattg ... tgtcacgcagGTTGGTGGGTTGATGAAAAACTTGCCATTTGTTGCAGC
EST: gi|32826124|gb|CD965802.1|CD965802
EST:     TAGAATGTGTTGATATTATTGGATACTTCATTGACCATCATGGGACTGAG                         GTTGGTGGGTTGATGAAAAACTTGCCATTTGTTGCAGCACTGACAGCAGAG
genomic: TAGAATGTGTTGATATTATTGGATACTTCATTGACCATCATGGGACTGAGgtctgaattg ... tgtcacgcagGTTGGTGGGTTGATGAAAAACTTGCCATTTGTTGCAGCACTGACAGCAGAG