Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTATAGCTGGTTCTCTCTGTACACACAGGGACATGGTTTCCGCACAGAACTTATATCCATGCTTTTGGATTTGAAACCACGATTCTTGAGGTTTCCTGgtatgcactgtgttttcacatttaaaatcaagttcttcatgtttggacatatattacgtgttcatagatgtttcagatatttgatagattccatgcgactactgtag

Basic information

species Zea mays
transcript GRMZM2G006130_T05
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006130_T05 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os11g03730.2 (Oryza sativa), 5'ss of exon 7
ATTTATAGCTGGTTCTCTCTGTACACACAGGGACATGGTTTCCGCACAGAACTTATATCCATGCTTTTGGATTTGAAACCACGATTCTTGAGGTTTCCTGgtatgcactgtgttttcacatttaaaatcaagttcttcatgtttggacatatattacgtgttcatagatgtttcagatatttga--tagattccatgcga-ctactgtag
                              ||||||||||| ||||||||||||||||| ||| | ||||| || ||||||||||||||||| || |||||||||  || | ||||| |||| |||||||||||||| || | |  | ||||          || | |||| |  |||| ||||  |   || ||| | | | | |||||
------------------------------GGACATGGTTTTCGCACAGAACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagctatattttcccattgaaaatcaagttcttgatatgtacatatatgc--------cagacatgtctgggataattgacttgatttacattcaaacaattgtag

upper sequence: GRMZM2G006130_T05 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os12g03470.5 (Oryza sativa), 5'ss of exon 7
ATTTATAGCTGGTTCTCTCTGTACACACAGGGACATGGTTTCCGCACAGAACTTATATCCATGCTTTTGGATTTGAAACCACGATTCTTGAGGTTTCCTGgtatgcactgtgttttcacatttaaaatcaagttcttcatgtttggacatatattacgtgttcatagatgtttcagatatttga--tagattccatgcga-ctactgtag
                              ||||||||||| ||||||||||| ||||| ||| | ||||| || ||||||||||||||||| || |||||||||  || | |||||  ||| |||||||||||||| || | || ||||||||       ||| |  ||| |  |||| ||||  |   |||||| | | | | |||||
------------------------------GGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagctatattttccaattgaaaatcaagttcttgatatctgcacatatatg------tcagacgtgtctgggataattgacttgatttccattcaaacaattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18963147|gb|BM660266.1|BM660266
EST:     ACTTATATCCATGCTTTTGGATTTGAAACCACGATTCTTGAGATTTCCTG                         GAGGTTGTTTTGTAGAAGGTGACTGGCTAAGAAATGCATTCAGATGGAGAG
genomic: ACTTATATCCATGCTTTTGGATTTGAAACCACGATTCTTGAGGTTTCCTGgtatgcactg ... actactgtagGAGGTTGTTTTGTAGAAGGTGACTGGCTAAGAAATGCATTCAGATGGAGAG
EST: gi|18654845|gb|BM499650.1|BM499650
EST:     ACTTATATCCATGCTTNTGGATTTGAAACCACGATTCTTGAGATTTCCTG                         GAGGTTGTTTTGTAGAAGGTGACTGGCTAAGAAATGCATTCAGATGGAGAG
genomic: ACTTATATCCATGCTTTTGGATTTGAAACCACGATTCTTGAGGTTTCCTGgtatgcactg ... actactgtagGAGGTTGTTTTGTAGAAGGTGACTGGCTAAGAAATGCATTCAGATGGAGAG
EST: gi|18661865|gb|BM501621.1|BM501621
EST:     ACTTATATCCATGCTTTTGGATTTGAAACCACGATTCTTGAGATTTCCTG                         GAGGTTGTTTTGTAGAAGGTGACTGGCTAAGAAATGCATTCAGATGGAGAG
genomic: ACTTATATCCATGCTTTTGGATTTGAAACCACGATTCTTGAGGTTTCCTGgtatgcactg ... actactgtagGAGGTTGTTTTGTAGAAGGTGACTGGCTAAGAAATGCATTCAGATGGAGAG