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GAGCGCACAATACTGTTATGTGGATAGGAATAATCCTGTAGGTTTGATGCTTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACGgtaagcttcaattatcttggtgaacgcaaacctaattgctcatattggtttttatcctggcattttatctatcatgcatggttcttacaggatcctgacg...
species | Zea mays |
transcript | GRMZM5G831712_T02 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACG TCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAAEST: gi|60351643|gb|DN218616.1|DN218616
genomic: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACGgtaagcttca ... gttgctgcagTCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAA
EST: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACG TCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAAEST: gi|60394841|gb|DN227710.1|DN227710
genomic: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACGgtaagcttca ... gttgctgcagTCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAA
EST: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACG TCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAAEST: gi|94475980|gb|EB704938.1|EB704938
genomic: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACGgtaagcttca ... gttgctgcagTCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAA
EST: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACG TCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAAEST: gi|211088585|gb|FL093444.1|FL093444
genomic: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACGgtaagcttca ... gttgctgcagTCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAA
EST: GAACTAAAGAAAGCCACG TCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAAEST: gi|60345790|gb|DN212763.1|DN212763
genomic: GAACTAAAGAAAGCCACGgtaagcttca ... gttgctgcagTCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAA
EST: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACG TCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAAEST: gi|211088584|gb|FL093443.1|FL093443
genomic: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACGgtaagcttca ... gttgctgcagTCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAA
EST: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACG TCCATGGACAAACCTCEST: gi|60350335|gb|DN217308.1|DN217308
genomic: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACGgtaagcttca ... gttgctgcagTCCATGGACAAACCTC
EST: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACG TCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAAEST: gi|94475979|gb|EB704937.1|EB704937
genomic: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACGgtaagcttca ... gttgctgcagTCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAA
EST: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACG TCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAA
genomic: TTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACGgtaagcttca ... gttgctgcagTCCATGGACAAACCTCCAAGAGGGAAGCATTCGACCAAGGGATTAGGCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCGCACAATACTGTTATGTGGATAGGAATAATCCTGTAGGTTTGATGCTTCTTTCTGAGGTTGCTTTAGGAGACATGTATGAACTAAAGAAAGCCACGgtaagcttcaattatcttggtgaacgcaaacctaattgctcatattggtttttatcctggcattttatctatcatgcatggttcttacaggatcctgacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA