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ATCACGAAGAAAAGACAAGCTGAGGTATCGTTATCCGAGAGGAGAATCCTATCTTGACGTCATTCAAAGgtcagtattgcctattgatactattgcatggctctatacatgattcagttacttatatgtgttgccacctaatctgaaaattcctctatgtccag
species | Zea mays |
transcript | GRMZM5G824405_T02 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CTGAGGTATCGTTATCCGAGAGGAGAATCCTATCTTGACGTCATTCAAAG ACTAGAACCTGTGATAATTGAACTTGAACGACAGCGTGCTCCAGTTGTAGTEST: gi|5714261|gb|AI944246.1|AI944246
genomic: CTGAGGTATCGTTATCCGAGAGGAGAATCCTATCTTGACGTCATTCAAAGgtcagtattg ... ctatgtccagACTAGAACCTGTGATAATTGAACTTGAACGACAGCGTGCTCCAGTTGTAGT
EST: CCGAAAGGAGAATCCTATCTTGACGTCATTCAAAG ACTAGAACCTGTGATAATTGAACTTGAACGACAAGCGTGCTCCAGTTGTAGEST: gi|211455219|gb|FL443686.1|FL443686
genomic: CCGAGAGGAGAATCCTATCTTGACGTCATTCAAAGgtcagtattg ... ctatgtccagACTAGAACCTGTGATAATTGAACTTGAACGAC-AGCGTGCTCCAGTTGTAG
EST: CTGAGGTATCGTTATCCGAGAGGAGAATCCTATCTTGACGTCATTCAAAG ACTAGAACCTGTGATAATTGAACTTGAACGACAGCGTGCTCCAGTTGTAGTEST: gi|78021450|gb|DV489837.1|DV489837
genomic: CTGAGGTATCGTTATCCGAGAGGAGAATCCTATCTTGACGTCATTCAAAGgtcagtattg ... ctatgtccagACTAGAACCTGTGATAATTGAACTTGAACGACAGCGTGCTCCAGTTGTAGT
EST: CTGAGGTATCGTTATCCGAGAGGAGAATCCTATCTTGACGTCATTCAAAG ACTAGAACCTGTGATAATTGAACTTGAACGACAGCGTGCTCCAGTTGTAGTEST: gi|5714269|gb|AI944254.1|AI944254
genomic: CTGAGGTATCGTTATCCGAGAGGAGAATCCTATCTTGACGTCATTCAAAGgtcagtattg ... ctatgtccagACTAGAACCTGTGATAATTGAACTTGAACGACAGCGTGCTCCAGTTGTAGT
EST: CTGAGGTATCGTTATCCGAGAGGAGAATCCTATCTTGACGTCATTCAAAG ACTAGAACCTGTGATAATTGAACTTGAACGACAGCGTGCTCCAGTTGTAGTEST: gi|67015674|gb|CO444423.1|CO444423
genomic: CTGAGGTATCGTTATCCGAGAGGAGAATCCTATCTTGACGTCATTCAAAGgtcagtattg ... ctatgtccagACTAGAACCTGTGATAATTGAACTTGAACGACAGCGTGCTCCAGTTGTAGT
EST: CTGAGGTATCGTTATCCGAGAGGAGAATCCTATCTTGACGTCATTCAAAG ACTAGAACCTGTGATAATTGAACTTGAACGACAGCGTGCTCCAGTTGTAGTEST: gi|67010650|gb|CO439399.1|CO439399
genomic: CTGAGGTATCGTTATCCGAGAGGAGAATCCTATCTTGACGTCATTCAAAGgtcagtattg ... ctatgtccagACTAGAACCTGTGATAATTGAACTTGAACGACAGCGTGCTCCAGTTGTAGT
EST: CTGAGGTATCGTTATCCGAGAAGAGA-TCCTATCTTGACGTCATTCAAAG ACTAGAACCTGTGNATA-TTGAACTTGA-CGACAGCGTGCTCCAGTTGTAG
genomic: CTGAGGTATCGTTATCCGAGAGGAGAATCCTATCTTGACGTCATTCAAAGgtcagtattg ... ctatgtccagACTAGAACCTGTG-ATAATTGAACTTGAACGACAGCGTGCTCCAGTTGTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCACGAAGAAAAGACAAGCTGAGGTATCGTTATCCGAGAGGAGAATCCTATCTTGACGTCATTCAAAGgtcagtattgcctattgatactattgcatggctctatacatgattcagttacttatatgtgttgccacctaatctgaaaattcctctatgtccag
- - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - GGAGAA