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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGGACTAGCACACTCCAGAGAACAATATTAACAGCACATCCGATCATTGGTTTTCCAAAGgttagctatcataggtgataaaataggcctagcaagactgctctctacttatagaagtgttaccaaaactaacttgtttctcctcatgttcttctag

Basic information

species Zea mays
transcript GRMZM5G824405_T01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os03g18310.3 (Oryza sativa), 5'ss of exon 16
-------------------------------------ATATGGACTAGCACACTCCAGAGAACAATATTAACAGCACATCCGATCATTGGTTTTCCAAAGgttagct-atcataggtgataaaataggcctagcaaga----ctgctctctacttatagaagtgttacc-aaaactaacttgtttctcctcatgttcttctag
                                     |||||||||||||||||||||||  ||||||||||||| || || |||||||| ||||||||||| || |     ||||  || |   |   | || ||||     |  |||| |||| |||   |   |||  | |||  | ||||| |||   ||| || ||||
ACTTCTTTCTTGAACTTGTGTGTGGCATTTGATTCAGATATGGACTAGCACACTCCAGAGGTCAATATTAACAGCGCAGCCTATCATTGGATTTCCAAAGgtcagtttgctctaggaaattaccaaactcaagtaagaaaattttgtctcaacttttagctatcaaacctgacactggcatgttt-tccatgtgtcct-ctag

upper sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os03g18310.1 (Oryza sativa), 5'ss of exon 17
ATATGGACTAGCACACTCCAGAGAACAATATTAACAGCACATCCGATCATTGGTTTTCCAAAGgttagct-atcataggtgataaaataggcctagcaaga----ctgctctctacttatagaagtgttacc-aaaactaacttgtttctcctcatgttcttctag
|||||||||||||||||||||||  ||||||||||||| || || |||||||| ||||||||||| || |     ||||  || |   |   | || ||||     |  |||| |||| |||   |   |||  | |||  | ||||| |||   ||| || ||||
ATATGGACTAGCACACTCCAGAGGTCAATATTAACAGCGCAGCCTATCATTGGATTTCCAAAGgtcagtttgctctaggaaattaccaaactcaagtaagaaaattttgtctcaacttttagctatcaaacctgacactggcatgttt-tccatgtgtcct-ctag

upper sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 16
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 18
ATATGGACTAGCACACTCCAGAGAACAATATTAACAGCACATCCGATCATTGGTTTTCCAAAGgttagctatcataggtgataaaataggccta-gcaagactgctctctacttatag---aagtgttaccaaaactaacttgtttctcctcatgttcttctag
||||||||||||||||| ||||||||||| ||||| |||  ||| ||  |||| || ||||||||| |     ||   |   |   |||| ||| |   |  | |  |  | ||  ||   |||    |   |||  || |      |     |   ||     
ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtgaatccttagaatgttaggactatgtttggttcccataaaatttaagggaaagaaaaaatgaaagaaaataaaaaataggtttaaactcaat-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|84980594|gb|DW530943.1|DW530943
EST:     CACTCCAGAGAACAATATTAACAGCACATCCGATCATTGGTTTTCCAAAG                         ATACAATGGCGTGCTCTTGATGAGATCAATGCTGGGGTCTGTGATGGGATG
genomic: CACTCCAGAGAACAATATTAACAGCACATCCGATCATTGGTTTTCCAAAGgttagctatc ... gttcttctagATACAATGGCGTGCTCTTGATGAGATCAATGCTGGGGTCTGTGATGGGATG
EST: gi|211189269|gb|FL030572.1|FL030572
EST:     CACTCCAGAGAACAATATTAACAGCACATCCGATCATTGGTTTTCCAAAG                         ATACAATGGCGTGCTCTTGATGAGATCAATGCTGGGGTCTGTGATGGGATG
genomic: CACTCCAGAGAACAATATTAACAGCACATCCGATCATTGGTTTTCCAAAGgttagctatc ... gttcttctagATACAATGGCGTGCTCTTGATGAGATCAATGCTGGGGTCTGTGATGGGATG
EST: gi|67015674|gb|CO444423.1|CO444423
EST:     CACTCCAGAGAACAATATTAACAGCACATCCGATCATTGGTTTTCCAAAG                         ATACAATGGCGTGCTCTTGATGAGATCAATGCTGGGGTCTGTGATGGGATG
genomic: CACTCCAGAGAACAATATTAACAGCACATCCGATCATTGGTTTTCCAAAGgttagctatc ... gttcttctagATACAATGGCGTGCTCTTGATGAGATCAATGCTGGGGTCTGTGATGGGATG
EST: gi|67010650|gb|CO439399.1|CO439399
EST:     CACTCCAGAGAACAATATTAACAGCACATCCGATCATTGGTTTTCCAAAG                         ATACAATGGCGTGCTCTTGATGAGATCAATGCTGGGGTCTGTGATGGGATG
genomic: CACTCCAGAGAACAATATTAACAGCACATCCGATCATTGGTTTTCCAAAGgttagctatc ... gttcttctagATACAATGGCGTGCTCTTGATGAGATCAATGCTGGGGTCTGTGATGGGATG