1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
AATTGCACATCCATGGAAAGATGAGAAGTCGAAGCAACATATATATGATCGTGTTTTTGATGCAAACACAAGTCAAGAAGAAATATTTGAGGATACTAAGgtgaatatttcaaatgctatcttttgtgttgatgccatcagtaatataaattttatttctaggactgttcactgagggtttcatatgatgtgttgaatttatgtgatgcag
species | Zea mays |
transcript | GRMZM2G423861_T01 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: GTGTTTTTGATGCAAACACAAGTCAAGAAGAAATATTTGAGGATACTAAG TACCTGGTACAATCAGCTGTTGATGGATATAACGTTTGCATATTTGCATATEST: gi|67042488|gb|CO468743.1|CO468743
genomic: GTGTTTTTGATGCAAACACAAGTCAAGAAGAAATATTTGAGGATACTAAGgtgaatattt ... tgtgatgcagTACCTGGTACAATCAGCTGTTGATGGATATAACGTTTGCATATTTGCATAT
EST: TGTTTTTGATGCAAACACAAGTCAAGAAGAAATATTNTCACGATACTAAG TACCTGGTACAATCAGCTGTTGATGGATATAACGTTTGCATATTTGCATATEST: gi|22489624|gb|BU049547.1|BU049547
genomic: TGTTTTTGATGCAAACACAAGTCAAGAAGAAATATT-TGAGGATACTAAGgtgaatattt ... tgtgatgcagTACCTGGTACAATCAGCTGTTGATGGATATAACGTTTGCATATTTGCATAT
EST: GTGTTTTTGATGCAAACACAAGTCAAGAAGAAATATTTGAGGATACTAAG TACCTGGTACAATCAGCTGTTGATGGATATAACGATTTGCATATTTGCATAEST: gi|211404724|gb|FL347368.1|FL347368
genomic: GTGTTTTTGATGCAAACACAAGTCAAGAAGAAATATTTGAGGATACTAAGgtgaatattt ... tgtgatgcagTACCTGGTACAATCAGCTGTTGATGGATATAACG-TTTGCATATTTGCATA
EST: GTGTTTTTGATGCAAACACAAGTCAAGAAGAAATATTTGAGGATACTAAG TACCTGGTACAATCAGCTGTTGATGGATATAACGTTTGCATATTTGCATATEST: gi|18649770|gb|BM498589.1|BM498589
genomic: GTGTTTTTGATGCAAACACAAGTCAAGAAGAAATATTTGAGGATACTAAGgtgaatattt ... tgtgatgcagTACCTGGTACAATCAGCTGTTGATGGATATAACGTTTGCATATTTGCATAT
EST: GTGTTTTTGATGCAAACACAAGTCAAGAAGAAATATTTGAGGATACTAAG TACCTGGTACAATCAGCTGTTGATGGATATAACGTTTGCATATTTGCATATEST: gi|22489601|gb|BU049524.1|BU049524
genomic: GTGTTTTTGATGCAAACACAAGTCAAGAAGAAATATTTGAGGATACTAAGgtgaatattt ... tgtgatgcagTACCTGGTACAATCAGCTGTTGATGGATATAACGTTTGCATATTTGCATAT
EST: GTGTTTTTGATGCAAACACAAGTCAAGAAGAAATATTTGAGGATACTAAG TACCTGGTACAATCAGCTGTTGATGGATATAACGATAGCATATTTGCATAT
genomic: GTGTTTTTGATGCAAACACAAGTCAAGAAGAAATATTTGAGGATACTAAGgtgaatattt ... tgtgatgcagTACCTGGTACAATCAGCTGTTGATGGATATAACGTTTGCATATTTGCATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGCACATCCATGGAAAGATGAGAAGTCGAAGCAACATATATATGATCGTGTTTTTGATGCAAACACAAGTCAAGAAGAAATATTTGAGGATACTAAGgtgaatatttcaaatgctatcttttgtgttgatgccatcagtaatataaattttatttctaggactgttcactgagggtttcatatgatgtgttgaatttatgtgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT