Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGAAGAGATCCACCCTACAGCTATTCTCAGTGTAGTTGCCAATCTGACACCTTGGTCTGATCACAACCAAAGTCCTAGGAACATGTACCAATGCCAGgttagtactcagaagtcagatcttgtccttatagtgattggttgatcatgctttcctttttggactaacccccagtcatcctccttgtttgcag

Basic information

species Zea mays
transcript GRMZM2G388892_T02
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G388892_T02 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os10g35290.1 (Oryza sativa), 5'ss of exon 17
TCATGAAGAGATCCACCCTACAGCTATTCTCAGTGTAGTTGCCAATCTGACACCTTGGTCTGATCACAACCAAAGTCCTAGGAACATGTACCAATGCCAGgttagtactcagaagtc----------agatcttgtccttatagtgattgg---ttgatcatgcttt-------------cctttttggactaaccc--ccagtcatcctccttgtttgcag
||||||||| |||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||  ||||  |           | |||   | || ||    | ||    ||| ||| || |              |||||||   |||  ||  | |  |  | | ||||||  |||
TCATGAAGAAATCCACCCTACAGCCATTCTTAGTGTAGTTGCAAATTTGACACCTTGGTCTGATCACAATCAAAGTCCTCGGAACATGTACCAATGTCAGgtcagtagccagatcttcccttactgtaaatcaatttctcatgcataatgaaaattgctcacgcataatgaatgctgagaccttttttttctagacctgctaacctgcttgcttgttcacag

upper sequence: GRMZM2G388892_T02 (Zea mays), 5'ss of exon 18
lower sequence: AT1G29940.1 (Arabidopsis thaliana), 5'ss of exon 19
TCATGAAGAGATCCACCCTACAGCTATTCTCAGTGTAGTTGCCAATCTGACACCTTGGTCTGATCACAACCAAAGTCCTAGGAACATGTACCAATGCCAGgttagtactcagaagtcagatcttgtccttatagtgattggttgatcatgctttcctttttggactaacccccagtcatcctccttgtttgcag
||| || || || || || || |  ||  | ||||| ||||| ||||| ||||||||||| ||||| |||||||||||  | |||||||| || || ||||| | |||| |||| |  |||       || || |||||     ||  ||||     ||||  |  ||    |||| || |             
TCACGAGGAAATTCATCCAACCGGGATGATAAGTGTGGTTGCTAATCTTACACCTTGGTCAGATCATAACCAAAGTCCCCGTAACATGTATCAGTGTCAGgt-attact-agaaattcgatgcaaatttttta-tgatt-----atgctgctggaagtttttta--aattttcagttatacag-----------

upper sequence: GRMZM2G388892_T02 (Zea mays), 5'ss of exon 18
lower sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 18
TCATGAAGAGATCCACCCTACAGCTATTCTCAGTGTAGTTGCCAATCTGACACCTTGGTCTGATCACAACCAAAGTCCTAGGAACATGTACCAATGCCAGgttagtactcagaagtca---gatcttgtccttatagtgattggttgatcatgctttccttt--ttggactaacccccag---tcatcctccttgtttgcag----------------
||||||||||||||| || || |  || |||||||| ||||| | ||| ||||||||||| ||||||||||| || ||  | || |||||||| || ||||||  | ||   | ||     ||    |  | |||| ||  |  | | || || | || |    ||  ||||||         |  |  || |  ||| |                  
TCATGAAGAGATCCATCCCACTGGAATGCTCAGTGTTGTTGCTAGTCTTACACCTTGGTCGGATCACAACCAGAGCCCGCGTAATATGTACCAGTGTCAGgttttttcttgcatgttgactgaaaaaggtcctataatgtattat-gctcctgttatcttcaaatttaactaactgttgtgttttgttttcttctttttctcttaaaatgattggtag

upper sequence: GRMZM2G388892_T02 (Zea mays), 5'ss of exon 18
lower sequence: EFJ24096 (Selaginella moellendorffii), 5'ss of exon 5
TCATGAAGAGATCCACCCTACAGCTATTCTCAGTGTAGTTGCCAATCTGACACCTTGGTCTGATCACAACCAAAGTCCTAGGAACATGTACCAATGCCAGgttagtactcagaagtcagatcttgtccttatagtgattggttgatcatgctttcctttttggactaacccccagtcatcctccttgtttgcag
|||    ||  | || || || |||||  | ||||| ||||| |   | ||||||||||| |||||||| ||||||||| | || |||||||| |||||||||  |||          || |  |      || || || |||  ||   |  |   |   |                                
TCACATTGAACTGCATCCGACGGCTATGTTGAGTGTGGTTGCAAGCTTAACACCTTGGTCGGATCACAATCAAAGTCCTCGAAATATGTACCAGTGCCAGgtttatac----------gagc--gctaccgtaatgtttagtttttctaacagtttctacag--------------------------------

upper sequence: GRMZM2G388892_T02 (Zea mays), 5'ss of exon 18
lower sequence: EFJ04457 (Selaginella moellendorffii), 5'ss of exon 18
TCATGAAGAGATCCACCCTACAGCTATTCTCAGTGTAGTTGCCAATCTGACACCTTGGTCTGATCACAACCAAAGTCCTAGGAACATGTACCAATGCCAGgttagtactcag---aagtcagatcttgtccttatagtgattggttgatcatgctttcctttttggactaacccccagtcatcctccttgtttgcag
|||    ||  | || || || |||||  | ||||| ||||| |     ||||||||||| |||||||| ||||||||| | || |||||||| |||||||||  |||       |  |||  | | ||  || ||    ||  |  |                                                 
TCACATTGAACTGCATCCGACGGCTATGTTGAGTGTGGTTGCAAGCTCAACACCTTGGTCGGATCACAATCAAAGTCCTCGAAATATGTACCAGTGCCAGgtttatacgagcgctacatcacgtttagtttttctaacagtttctacag------------------------------------------------

upper sequence: GRMZM2G388892_T02 (Zea mays), 5'ss of exon 18
lower sequence: EFJ35146 (Selaginella moellendorffii), 5'ss of exon 19
TCATGAAGAGATCCACCCTACAGCTATTCTCAGTGTAGTTGCCAATCTGACACCTTGGTCTGATCACAACCAAAGTCCTAGGAACATGTACCAATGCCAGgttagtactcagaagtcagatcttgtccttatagtgattggttgatcatgctttcctttttggactaacccccagtcatcctccttgtttgcag
|||    ||  | || || || |||||  | ||||| ||||| |     ||||||||||| |||||||| ||||||||| | || |||||||| |||||||||  |||          || |  |      || || || |||  ||   |  |   |   |                                
TCACATTGAACTGCATCCGACGGCTATGTTGAGTGTGGTTGCAAGCTCAACACCTTGGTCGGATCACAATCAAAGTCCTCGAAATATGTACCAGTGCCAGgtttatac----------gagc--gctaccgtaatgtttagtttttctaacagtttctacag--------------------------------