1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CATGAGCTTCCAGCAAAGCGTGCAAGCTGCAGGGGTGCCAGGCAGCCAGCCCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAGgtggagtactacctcccatccgcaaggccatttattcaccctcaataatttctaattttgacaacgtattaacatgaatgaaaatgtctaattttgagcag
species | Zea mays |
transcript | GRMZM2G168449_T03 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAG GCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATACEST: gi|87154999|gb|DY399788.1|DY399788
genomic: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAGgtggagtact ... ttttgagcagGCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
EST: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAG GCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATACEST: gi|50327677|gb|CO522803.1|CO522803
genomic: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAGgtggagtact ... ttttgagcagGCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
EST: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAG GCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATACEST: gi|32870722|gb|CF010404.1|CF010404
genomic: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAGgtggagtact ... ttttgagcagGCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
EST: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAG GCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATACEST: gi|7135944|gb|AW498346.1|AW498346
genomic: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAGgtggagtact ... ttttgagcagGCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
EST: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAG GCCGGGGCGCAGAGCACAAACCCATTCTCCGATGAGAGCGTTCAGGGATACEST: gi|78112307|gb|DV530701.1|DV530701
genomic: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAGgtggagtact ... ttttgagcagGCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
EST: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAG GCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
genomic: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAGgtggagtact ... ttttgagcagGCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGAGCTTCCAGCAAAGCGTGCAAGCTGCAGGGGTGCCAGGCAGCCAGCCCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAGgtggagtactacctcccatccgcaaggccatttattcaccctcaataatttctaattttgacaacgtattaacatgaatgaaaatgtctaattttgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG