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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATCACGGGGAATGTTGGAGGAAGCCCTCGAGATAGCAACTGACACTAATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcgatttcttttcttctccacattttcgagaaagtatttcttttttgaatttttctaatagtagttgttctgcag

Basic information

species Zea mays
transcript GRMZM2G141587_T01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141587_T02 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 18
GGAATCACGGGGAATGTTGGAGGAAGCCCTCGAGATAGCAACTGACACTAATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcgatttcttttcttctccacattttcgagaaagtattt--cttttttgaatttttctaatagtagttgttctgcag
|||||||||||| |||||||| |||||||| ||||||||||| ||| ||||||||||||||||| |||| ||||| |||||||| |||||| |||| |||||| |   ||||  |||  || || |||||| | |||| || |||  |||| || || | || | | | || ||| | | |||
GGAATCACGGGGCATGTTGGAAGAAGCCCTTGAGATAGCAACAGACTCTAATTACAGATTTGACTTGGCCGTGCAGCTTGGTCGGCTTGAAGTTGCAAAGgcacagatgattaatttatttatc-acatttccaagaatgtttttgtctttgttcaaatgttgtta-actatttgcttttcag

upper sequence: GRMZM2G141587_T02 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os02g11840.1 (Oryza sativa), 5'ss of exon 9
GGAATCACGGGGAATGTTGGAGGAAGCCCTCGAGATAGCAACTGACACTAATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcgatttcttttcttctccacattttcgagaaagtattt--cttttttgaatttttctaatagtagttgttctgcag
|||||||| ||| |||||||| |||||||| ||||||||||| ||| ||||||||||||||||| |||| ||||| |||||||| |||||| |||| |||||| |   ||||  |||  || || |||||| | |||| || |||  |||| || || | || | | | || ||| | | |||
GGAATCACAGGGCATGTTGGAAGAAGCCCTTGAGATAGCAACAGACTCTAATTACAGATTTGACTTGGCCGTGCAGCTTGGTCGGCTTGAAGTTGCAAAGgcacagatgattaatttatttatc-acatttccaagaatgtttttgtctttgttcaaatgttgtta-actatttgcttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18384334|gb|BM417533.1|BM417533
EST:     ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAG                         GCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
EST: gi|18384433|gb|BM417632.1|BM417632
EST:     ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAG                         GCGATTGC-ACC-AGGTGCAA-GTGAGTCCA-GTGGAAGATATTAGGGGAG
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
EST: gi|211291668|gb|FL235608.1|FL235608
EST:     ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCAAAG                         GCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
EST: gi|22489660|gb|BU049570.1|BU049570
EST:     ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAG                         GCGATTGCTACCGAGGTGCAAAGTGAGTCCA-GTGGAAGATA
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATA
EST: gi|18649807|gb|BM498626.1|BM498626
EST:     ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAG                         GCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
EST: gi|56382379|gb|CV985048.1|CV985048
EST:     ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCAAAG                         GCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
EST: gi|89106141|gb|DY576358.1|DY576358
EST:     ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAG                         GCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
EST: gi|60337474|gb|DN204447.1|DN204447
EST:     ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAG                         GCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
EST: gi|18649808|gb|BM498627.1|BM498627
EST:     ATTACAGATTTGACCTGGCTGTGCACCTTGGTCGACTTGAAATTGCGAAG                         GCGATTGCT-CCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG