Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCACTGGATCGGGAGAAACTACTACAGAAGGGGTCCGGAGGGCAATGACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacctctgtactgtatttaaataatgtatcttagtgtgccttttctgttaggtgttgtttggttcacggaatatcatgtaaatggtaataagttt...

Basic information

species Zea mays
transcript GRMZM2G134396_T02
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134396_T03 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os07g49270.1 (Oryza sativa), 5'ss of exon 19
TCTCACTGGATCGGGAGAAACTACTACAGAAGGGGTCCGGAGGGCAATGACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacctctgtactg---tatttaaataatgtatcttagtgtgccttttctgttag-gtgttgtttggttcacggaatatcat--gtaaatggtaataagttt
|| |||||||| |||||||||||||||| ||| ||||  || ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||    | | |   |   || |  |    | || |   ||| ||   |||  ||  |    | |||  | |  || | |||     ||   
TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtacttc-gtactagcttctctgcctggagtctgatctcttcccgtacttgtcagcacgtttgtttctgttggtaattgcgtttgttactggcccgcag---

upper sequence: GRMZM2G134396_T03 (Zea mays), 5'ss of exon 18
lower sequence: PP1S168_82V6.1 (Physcomitrella patens), 5'ss of exon 18
TCTCACTGGATCGGGAGAAACTACTACAGAAGGGGTCCGGAGGGCAATGACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacctctgtactgtatttaaataatgtatcttagtgtgccttttc---tgttaggtgt-tgtttggttcacggaatatcatgtaaatggtaa--taagttt------------------------------------
|| |||||| | || |  || || |||| ||||||||| ||||||||||| |||||  |||||||||| ||||||||  | || || || || ||    || || |    |   ||   ||||     || | |  | | |    || |   | |||| | | || | ||| ||     | |    |||||       | |||||                                    
TCGCACTGGCTTGGAAAGAATTATTACAAAAGGGGTCCTGAGGGCAATGATATCCATAAGACAAATGTCCCTCACATGCGCGTGGAGTTCCGTCATCAGgtgtgaaatcata-gcttcttttactgcttgcaacccattctatagttacgcattttagatatatgatgggtacattttgtttgtcataaatctctggtttagtttctggttggatgctcatgagtctatgttgtcctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14203330|gb|BG837007.1|BG837007
EST:     ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT                         ATCTGGAAAGAAGAAATGGAACTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: gi|67028452|gb|CO457201.1|CO457201
EST:     ACATCCACCAGACAAATGTTCCTCACATCAGGGNTGAATTTCGACACACT                         ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: gi|16925558|gb|BM078626.1|BM078626
EST:     ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT                         ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: gi|161590017|gb|EY959294.1|EY959294
EST:     ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT                         ATCTGGAAAGAAGAAATGGAGCTGATAC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATAC
EST: gi|78026552|gb|DV494939.1|DV494939
EST:     ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT                         ATCTGGAAAGAAGAAATGGAACTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: gi|211360498|gb|FL383506.1|FL383506
EST:     ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT                         ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: gi|50336749|gb|CO531875.1|CO531875
EST:     ACATCCCCCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: gi|71299097|gb|DR785545.1|DR785545
EST:     ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT                         ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: gi|149090162|gb|EE179462.2|EE179462
EST:     ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT                         ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: gi|24769083|gb|CA404212.1|CA404212
EST:     ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACCCACT                         ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: gi|33090962|gb|CF050956.1|CF050956
EST:     ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT                         ATCTGGAAAGAAGGAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: gi|78121620|gb|DV540004.1|DV540004
EST:     ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT                         ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: gi|211281929|gb|FL464725.1|FL464725
EST:     ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT                         ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: gi|4885898|gb|AI677018.1|AI677018
EST:     ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT                         ATCTGGAAAGAAGAAATGGAACTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: gi|211424040|gb|FL301692.1|FL301692
EST:     ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT                         ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: gi|71772852|gb|DR970775.1|DR970775
EST:     ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT                         ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC