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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAGgtgagaatacttatttgctcttatttagaacacaacctattacatgttaagcaaaagataatttatgcactatggctttacaactttgctccaaactcttaaatatattgcccaattcag

Basic information

species Zea mays
transcript GRMZM2G129155_T02
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G129155_T01 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os01g69130.2 (Oryza sativa), 5'ss of exon 18
GTTAATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAGgtgagaatacttatttgctcttatttagaacacaacctattacatgttaagcaaaagataatttatgcactatggctttacaactttgctccaaactcttaaatatattgcccaattcag
||||| || |||||| ||| ||||||||||||||||||||| || |||||||||||||   |    |||   || || || |  | ||  | | | | | |            ||  || |  |||  | || |||    |||  |   | ||  || ||| |    |     
GTTAACCACACAAAACGGGAGCTGCATAATTACCTTATAACTAAGCTTTATAGgtgagggaagccttttctactcatatacattataatgtttcaaacgctggatgtttccctataaatccgttataacatttcaaac--gctggatgtttttgtatgtatcgttgcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211024339|gb|FL478389.1|FL478389
EST:     AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAG                         AGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAA
genomic: AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAGgtgagaatac ... cccaattcagAGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAA
EST: gi|32847928|gb|CD987609.1|CD987609
EST:     AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAG                         AGATGATCTTTTGGAAGACTTGCT-AAAGAACCTGATGAGAT
genomic: AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAGgtgagaatac ... cccaattcagAGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGAT
EST: gi|88758145|gb|DY542286.1|DY542286
EST:     AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAG                         AGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAA
genomic: AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAGgtgagaatac ... cccaattcagAGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAA
EST: gi|37420874|gb|CF648134.1|CF648134
EST:     AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAA                         AGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAA
genomic: AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAGgtgagaatac ... cccaattcagAGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAA
EST: gi|33097482|gb|CF057442.1|CF057442
EST:     AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAG                         AGATGATCTTTTGAAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAA
genomic: AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAGgtgagaatac ... cccaattcagAGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAA