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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGTATTCTGTTACACTTATGGTGAACTAAGGACCGCTACTGAAAATTTTAGTTCTGCTAATCTTCTTGGTGAAGGGGGATATGGATCAGTTTATAAGgtttgttcatttgtagtacacaatgcatgatttgaatctgctagggatcttttgtggcactgtaggttaatagtgaacaacgaatttgttttcattgtgc...

Basic information

species Zea mays
transcript GRMZM2G126858_T02
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os04g52640.2 (Oryza sativa), 5'ss of exon 19
-TAATGTATTCTGTTACACTTATGGTGAACTAAGGACCGCTACTGAAAATTTTAGTTCTGCTAATCTTCTTGGTGAAGGGGGATATGGATCAGTTTATAAGgtttgttcatttgtagtacaca---atgcatgatttgaatctgctagggatcttttgtggcactgtaggttaata-gtgaacaacgaatttgttttcattgtgc
   |  || | | || || |||||||||||||||| |||| |||||||||||||||||    || | |||||||||||| ||||||||  |||||||||||||| |||||||| || || | |   |      | ||  | ||   |      |||  |  || | |||   | ||   |   |  | ||   |      |    
AAGACCTAATATATT-CAGTTATGGTGAACTAAGGTCCGCAACTGAAAATTTTAGTTCCAGCAACCGTCTTGGTGAAGGAGGATATGGGGCAGTTTATAAGgttagttcatttatattatatatgaacatgaaagttttacctatgaaatcaatttattaaca-tatagacaagtacacgggtattgtatagctaaaagata---

upper sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os04g52614.1 (Oryza sativa), 5'ss of exon 16
-TAATGTATTCTGTTACACTTATGGTGAACTAAGGACCGCTACTGAAAATTTTAGTTCTGCTAATCTTCTTGGTGAAGGGGGATATGGATCAGTTTATAAGgtttgttcatttgta-gtacaca-atgcat-----gatttgaatctgctagggatcttttgtggcactgtaggttaatagtgaacaacgaatttgttttcattgtgc
   |  || | | || || |||| ||||||||||| | || |||||||||||||||||    || |  ||||||||||| ||||||||  |||||||||||||| |||||| |||| ||||| | ||  ||     | || |||  || || |||  |||     |    ||  ||| ||  |   |   || | || | |       
AAGACCTAATGTATT-CAGTTATAGTGAACTAAGGTCTGCAACTGAAAATTTTAGTTCCAGCAACCGCCTTGGTGAAGGAGGATATGGGACAGTTTATAAGgttagttcatctgtaagtacatatatatattcgaagtttcgaacttgttatggaattttacctacgaattaacttattaacgtctagacaagtagtgtac-------

upper sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os04g52600.1 (Oryza sativa), 5'ss of exon 20
-TAATGTATTCTGTTACACTTATGGTGAACTAAGGACCGCTACTGAAAATTTTAGTTCTGCTAATCTTCTTGGTGAAGGGGGATATGGATCAGTTTATAAGgtttgttcatttgtag--------tacacaatgcatgatttgaatct-gctagggatcttttgtggcactgtaggttaatagtgaacaacgaatttgttttcattgtgc
   |  || | | || || |||| ||||||||||| | || |||||||||||||||||    || | |||||||||||| ||||||||  |||||||||||||| || ||| ||||         |    | |   |  ||  ||||| | || | |    || |   | |    |||  |  || | ||  |||| |||          
AAGACCTAATGTATT-CAGTTATAGTGAACTAAGGTCTGCAACTGAAAATTTTAGTTCCAGCAACCGTCTTGGTGAAGGAGGATATGGGGCAGTTTATAAGgttagt-catctgtaaccttttcctgtgaattaacttgttaaaatctagataagtagtgattatataatttgttgttcgttatggataattaattggttac--------

upper sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os04g52606.1 (Oryza sativa), 5'ss of exon 6
TAATGTATTCTGTTA-CACTTATGGTGAACTAAGGACCGCTACTGAAAATTTTAGTTCTGCTAATCTTCTTGGTGAAGGGGGATATGGATCAGTTTATAAGgtttgttcatttgtagtacacaatgcatgatttgaatctgctagggatcttttgtggcactgtaggttaatag-----tgaacaacgaatttgttttcattgtgc-
 ||       ||| | || ||||||||| |||||| |||| |||||||||||||||||    || |||||||||||||| ||||| ||  |||| ||||||||   ||||| | ||| | | |      ||||   |  |   |    | ||   ||    | |    | |||      |  || |  | | | ||   |    || 
-AAGACCCAATGTAATCAGTTATGGTGAGCTAAGGTCCGCAACTGAAAATTTTAGTTCCAGCAACCTTCTTGGTGAAGGAGGATACGGGGCAGTCTATAAGgtaatttcatctatagcatata------gattgtgagttatgacattttttcaatgaagttattaacttataaacatctagacgagtagtatattgcaaaaaagct