Sequence
atgc intronic sequence ATGC exonic sequenceTCATGACTCATTTTGGGTGCATGCGTGTGATGTTGATCAAATGAACCAGATATTGAGACAACAATTTGTGGAGCTTTACAGCATGCCGATTCTTGAAAATgtatgccactggaacaattgtcttcaactcttaaagttacttcattctacaactgagcaataatcgccaatgcttaatgttttatttatatgcattttgcatatctttggtgattcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G115564_T02 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os06g44230.1 (Oryza sativa), 5'ss of exon 18
TCATGACTCATTTTGGGTGCATGCGTGTGATGTTGATCAAATGAACCAGATATTGAGACAACAATTTGTGGAGCTTTACAGCATGCCGATTCTTGAAAATgtatgcca-ctggaacaattgtctt--caac-tcttaaagtta--cttcattctacaactgagcaataatcgccaatgct--taatgttttatttatatgcattttgcatatctttggtgattcag
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GCATGACTCGTTTTGGGTGCATGCATGTGATGTTGATAAAATGAATCAGATACTGAGAGAACAATTTGTGGAGCTTTACAGCATGCCAATTCTTGAAAATgtatgctaacaggcactattcactcaacagtgtcttcattctacacttcactttaaactctacatgtgaggattacttcccctaacaatttatttcttttcaatttgaatgtttctt----ttcag
upper sequence: GRMZM2G115564_T02 (Zea mays), 5'ss of exon 18
lower sequence: GLYMA06G24890.1 (Glycine max), 5'ss of exon 11
TCATGACTCATTTTGGGTGCATGCGTGTGATGTTGATCAAATGAACCAGATATTGAGACAACAATTTGTGGAGCTTTACAGCATGCCGATTCTTGAAAATgtatgccactggaacaattgtcttcaactcttaaagttacttcattctacaactgagcaataatcgccaatgcttaatgttttatttatatgcattttgcatatctttggtgattcag
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TCATGATTCGTTTTGGACACACCCATGCGATGTTGAGAAAATGAATCAGATTCTAAGAGAAAAATTTGTGGAGCTTTATAACATGCCTATACTTGAAAATgtaagttcttg---ctgtggcctgagaaatgtatactta---tattctaggaacatggagaaaa-attaatattttccgtctcactgtcaaatatat-gcaagttcat----------
upper sequence: GRMZM2G115564_T02 (Zea mays), 5'ss of exon 18
lower sequence: GLYMA17G07940.1 (Glycine max), 5'ss of exon 18
TCATGACTCATTTTGGGTGCATGCGTGTGATGTTGATCAAATGAACCAGATATTGAGACAACAATTTGTGGAGCTTTACAGCATGCCGATTCTTGAAAATgta----tgccactggaaca--attgtcttcaactc---ttaaagttacttcattctacaactgagcaataatcgcc--aatgcttaatgtt-----ttatttatatgcattttgcatatctttggtgattcag------------------------------------------------------
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TCATGACTCGTTTTGGACACATGCATGTGACGTGGAGAAAATGAGTCAGATTCTTAGAGAAAAATTTGTGGAACTTTATAGCATGCCAATACTTGAAAATgtaatcttttttctgtatcatgagaaactttggcttattttataggaatatatggagaaaagttatttcttattttctcattatctaatattaaacatcatgtccttacttaatgcaaatcttttgccttttagaccaatggagggagaaaaaaaactcattatttgataattttgatatgttaacag
upper sequence: GRMZM2G115564_T02 (Zea mays), 5'ss of exon 18
lower sequence: Vv11s0037g00630.t01 (Vitis vinifera), 5'ss of exon 18
TCATGACTCATTTTGGGTGCATGCGTGTGATGTTGATCAAATGAACCAGATATTGAGACAACAATTTGTGGAGCTTTACAGCATGCCGATTCTTGAAAATgtatgc-cactggaacaattgtcttcaactcttaaagttacttcattctacaactgagcaataatcgccaatgcttaatgttttatttatatgcattttgcatatctttggtgattcag
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GCATGACTCCTTCTGGACACATGCATGTGATGTTGACAAGATGAATCAGATACTTCGGGAAAAATTTGTAGAGCTTTACAGTATGCCAATACTTGAAAATgtaagtgtattgcaacc-ttctttccctatattaatgtgagagc-ctgta-aatttagaatttcttttggatgtgttgaatgtcacctgaa-gaagtgtgcctt---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60358999|gb|DN225972.1|DN225972EST: TATTGAGACAACAATTTGTGGAGCTTTACAGCATGCCGATTCTTGAAAAT CTGCTGGAGGAGTTCCAAACGTCATTCCCCACACTAGAATTTCCACCCTGC
genomic: TATTGAGACAACAATTTGTGGAGCTTTACAGCATGCCGATTCTTGAAAATgtatgccact ... ggtgattcagCTGCTGGAGGAGTTCCAAACGTCATTCCCCACACTAGAATTTCCACCCTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCATGACTCATTTTGGGTGCATGCGTGTGATGTTGATCAAATGAACCAGATATTGAGACAACAATTTGTGGAGCTTTACAGCATGCCGATTCTTGAAAATgtatgccactggaacaattgtcttcaactcttaaagttacttcattctacaactgagcaataatcgccaatgcttaatgttttatttatatgcattttgcatatctttggtgattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT