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AAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAAGCCAACCGAGACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcctatatagggttgcattgcccaactccttgcacgaaatgggttttgattttttagaactttttttcctttggaattgtag
species | Zea mays |
transcript | GRMZM2G108829_T03 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|78078782|gb|DV507194.1|DV507194
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|24764828|gb|CA399990.1|CA399990
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|211129651|gb|FL443400.1|FL443400
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|32864986|gb|CF004668.1|CF004668
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|84980182|gb|DW530531.1|DW530531
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|78022750|gb|DV491137.1|DV491137
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTACCTGAAACTGGCCGAGGAGEST: gi|76285158|gb|DV024726.1|DV024726
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: AGCAATAAACTAATTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|32864987|gb|CF004669.1|CF004669
genomic: AGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GGCTAGCAATAAACTAACTACGAATCGGGTGCCAGCTCGGAATAGCCCAG GGAATCCTGTTCTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|40334857|gb|CK368927.1|CK368927
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|37378370|gb|CF625872.1|CF625872
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|211129652|gb|FL443401.1|FL443401
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: AGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|5770191|gb|AI973365.1|AI973365
genomic: AGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTACCTGAAACTGGCCGAGGAGEST: gi|211496287|gb|FL041699.1|FL041699
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAA GGNAATCCTGTACTTAGGCATTCACGGAGCTTGCCTEST: gi|31359660|gb|CD444017.1|CD444017
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGG-AATCCTGTACTTAGGCATTCACGGAGCTTGCCT
EST: CGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|5919395|gb|AW054492.1|AW054492
genomic: CGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|60349834|gb|DN216807.1|DN216807
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|116824201|gb|EC867803.1|EC867803
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTA-CAATAAACTAACTACG-ATCGGGT-CCAGCTCGGAATAGCCCA- GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|5325074|gb|AI783265.1|AI783265
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTACCTGAAACTGGCCGAGGAGEST: gi|5846886|gb|AI999969.1|AI999969
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTACCTGAAACTGGCCGAGGEST: gi|87155121|gb|DY399910.1|DY399910
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|15215165|gb|BI431185.1|BI431185
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|60358960|gb|DN225933.1|DN225933
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAGEST: gi|211386736|gb|FL133265.1|FL133265
genomic: GACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAAACTGGCCGAGGAG
EST: TAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAG GGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGAWRACTGGCCGAGGA
genomic: TAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcc ... ggaattgtagGGAATCCTGTACTTAGGCATTCACGGAGCTTGCCTGA-AACTGGCCGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAAGCCAACCGAGACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCGGAATAGCCCAGgcaagtttcctatatagggttgcattgcccaactccttgcacgaaatgggttttgattttttagaactttttttcctttggaattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC