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TATACGACCAAAGAAATTGGCCTTAAAATTAGCATTTACTTTACCAACATCATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCAgtatgttcatacattttttttaatttttttacctgtagttgtttgttgcttagaaatcccctttcagaatctgtttcataatctccttgattgcctgcag
species | Zea mays |
transcript | GRMZM2G096553_T01 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCA GTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCCEST: gi|67025158|gb|CO453907.1|CO453907
genomic: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCAgtatgttcat ... ttgcctgcagGTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCC
EST: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCA GTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCCEST: gi|60352877|gb|DN219850.1|DN219850
genomic: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCAgtatgttcat ... ttgcctgcagGTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCC
EST: ATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCA GTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCCEST: gi|211224590|gb|FL216904.1|FL216904
genomic: ATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCAgtatgttcat ... ttgcctgcagGTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCC
EST: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCA GTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCCEST: gi|86465812|gb|DY232185.1|DY232185
genomic: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCAgtatgttcat ... ttgcctgcagGTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCC
EST: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCA GTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCCEST: gi|71773678|gb|DR971575.1|DR971575
genomic: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCAgtatgttcat ... ttgcctgcagGTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCC
EST: CATGCTACGCTACAATGGCTATCCGGGAGCTTTTGAAGACTTCCACCTCA GTTGCATATCAGAAAACACTCAGCTGCTAGATTTTGTTTGGAAGACATTCCEST: gi|60347237|gb|DN214210.1|DN214210
genomic: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCAgtatgttcat ... ttgcctgcagGTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCC
EST: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCA GTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCCEST: gi|60397731|gb|DN230547.1|DN230547
genomic: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCAgtatgttcat ... ttgcctgcagGTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCC
EST: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCA GTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCCEST: gi|5740555|gb|AI948245.1|AI948245
genomic: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCAgtatgttcat ... ttgcctgcagGTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCC
EST: CATGNTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCA GTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCCEST: gi|13149531|gb|BG319853.1|BG319853
genomic: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCAgtatgttcat ... ttgcctgcagGTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCC
EST: CATS-TACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCA GTTGCATATCAGAAAACACRCAGCTGCTAGATTCTGTTTGGAAGACATTCCEST: gi|161584306|gb|EY955983.1|EY955983
genomic: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCAgtatgttcat ... ttgcctgcagGTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCC
EST: CGGGAGCTTCTGAAGACTTCCACCTCA GTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCCEST: gi|211224589|gb|FL216903.1|FL216903
genomic: CGGGAGCTTCTGAAGACTTCCACCTCAgtatgttcat ... ttgcctgcagGTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCC
EST: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCA GTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCCEST: gi|211067559|gb|FL462521.1|FL462521
genomic: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCAgtatgttcat ... ttgcctgcagGTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCC
EST: CATG-TACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCA GTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCC
genomic: CATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCAgtatgttcat ... ttgcctgcagGTTGCATATCAGAAAACACTCAGCTGCTAGATTCTGTTTGGAAGACATTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATACGACCAAAGAAATTGGCCTTAAAATTAGCATTTACTTTACCAACATCATGCTACGCTACAATGGCTATCCGGGAGCTTCTGAAGACTTCCACCTCAgtatgttcatacattttttttaatttttttacctgtagttgtttgttgcttagaaatcccctttcagaatctgtttcataatctccttgattgcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA