Sequence
atgc intronic sequence ATGC exonic sequenceGGAATCTAGAGGTATGTTGGAAGAGGCTCTTGAGATAGCCACGGATGCTGACTACAAGTTTGACCTAGCTGTGCAGCTTGGAAAATTAGATGTTGCAAAGgtactgattatattgtcactgattttctttctccaaatatcatagactattttgaggtattgtatactgcattgctacaaaattacaaagtaacatactc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 18
GGAATCTAGAGGTATGTTGGAAGAGGCTCTTGAGATAGCCACGGATGCTGACTACAAGTTTGACCTAGCTGTGCAGCTTGGAAAATTAGATGTTGCAAAGgtactgattatattgtcactgattttctttctccaaatatcatagactattttg--aggtattgtatactgcattgctacaaaattacaaa-gtaacatactc------------------
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GGAGTCAAGAGGTATGCTGGAGGAAGCACTTGAGATAGCTACTGATGCTGATTACAGGTTTGACCTAGCTGTGCAACTTGGAAAATTAGAAGTTGCAAAGgtacagaacatgttgtattgtgtttttgttccacattattgaaataatgttctgaaaggtcttccatgctgtgaagttcattgctaataaacagaatggattctggacattttctgtgcag
upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 18
GGAATCTAGAGGTATGTTGGAAGAGGCTCTTGAGATAGCCACGGATGCTGACTACAAGTTTGACCTAGCTGTGCAGCTTGGAAAATTAGATGTTGCAAAGgta----ctgattatattgtcactgattttctttctccaaatatcatagactatt--ttgaggtatt--gtatactgcattgcta--caaaattacaaagtaacatactc----------------------------------
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GGAATCACGAGGTATGATAGAAGATGCCCTTGAAGTAGCTACTGACCCTGACTACAGATTTGATCTAGCAATACAGCTTGGAAAACTAGATGTTGCAAAGgtatgctcatgtaatatgtctacaaggagatattgtttaatttgtgaaagctgttaacttgggtatctaattttcttcatttctcttcatcagtttgatttgtcattttatatcacaaataatatacctccttttcccatgcag
upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 18
GGAATCTAGAGGTATGTTGGAAGAGGCTCTTGAGATAGCCACGGATGCTGACTACAAGTTTGACCTAGCTGTGCAGCTTGGAAAATTAGATGTTGCAAAGgta----ctgattatattgtcactgattttctttctccaaatatcatagactatt--ttgaggtatt--gtatactgcattgcta--caaaattacaaagtaacatactc----------------------------------
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TGAATCACGAGGGATGATAGAAGATGCTCTTGAAGTAGCTACTGACCCTGAGTACAGATTTGATCTATCAATACAGCTTGGAAAACTAGATGTTGCAAAGgtatgttcatgcaatatatctacaaggagatattgtttaatttgtgaaaattgttaacttgggtatccaatattcttcatttcttttcatcagtttgatttgtcattttatatcacaaataatatacctcctttttctttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32832815|gb|CD972493.1|CD972493EST: ACTACAAGTTTGACCTAGCTGTGCAGCTTGGAAAATTAGATGTTGCAAAG GCTATCGTCATAGAAGCACAGAGTGAATCTAAATGGAAGCAGTTGGGTGAA
genomic: ACTACAAGTTTGACCTAGCTGTGCAGCTTGGAAAATTAGATGTTGCAAAGgtactgatta ... tactgttcagGCTATCGTCATAGAAGCACAGAGTGAATCTAAATGGAAGCAGTTGGGTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAATCTAGAGGTATGTTGGAAGAGGCTCTTGAGATAGCCACGGATGCTGACTACAAGTTTGACCTAGCTGTGCAGCTTGGAAAATTAGATGTTGCAAAGgtactgattatattgtcactgattttctttctccaaatatcatagactattttgaggtattgtatactgcattgctacaaaattacaaagtaacatactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG