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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACCTTGGCCAGTCATAAGAGCAAACGCAGTTTGTTTGGTGAGTTGCATGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAGgtattaatactaaagtctggtggtttatttagtcgtagtactcaatgaatttactaacattcttgtgtgtcag

Basic information

species Zea mays
transcript GRMZM2G086093_T01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086093_T03 (Zea mays), 5'ss of exon 21
lower sequence: LOC_Os03g05330.1 (Oryza sativa), 5'ss of exon 29
TGCACCTTGGCCAGTCATAAGAGCAAACGCAGTTTGTTTGGTGAGTTGCATGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAGgtattaatactaaagtctggtggtttatttagtcgtagtactcaatg---aatttactaacattcttgtgtgtcag--
|||||||||||||||||| | |||||| |||||||| |||||||| ||||||||||||||||| |||||||| || ||| | |||||||| |||||||||||||   ||||  | |||||| ||| | ||  |   |  | |  |||   ||  || |||||   || | ||||    
TGCACCTTGGCCAGTCATCAAAGCAAATGCAGTTTGCTTGGTGAGCTGCATGCTATCCTTTTTAGATGATCAACGGTTCCTCGCTCCTTACTTCTCCCAGgtatccttactggattctggtagttcacttgtttagaacatttcatgtttaaggtattaacacaattttatgtcgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24769352|gb|CA404481.1|CA404481
EST:     TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAG                         GTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTT
genomic: TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAGgtattaatac ... tgtgtgtcagGTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTT
EST: gi|60354946|gb|DN221919.1|DN221919
EST:     TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAG                         GTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTT
genomic: TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAGgtattaatac ... tgtgtgtcagGTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTT
EST: gi|67021578|gb|CO450327.1|CO450327
EST:     TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAG                         GTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTT
genomic: TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAGgtattaatac ... tgtgtgtcagGTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTT
EST: gi|37376693|gb|CF624900.1|CF624900
EST:     TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAG                         GTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCTCCAGACGCAATTGTT
genomic: TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAGgtattaatac ... tgtgtgtcagGTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTT
EST: gi|67025348|gb|CO454097.1|CO454097
EST:     TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAG                         GTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTT
genomic: TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAGgtattaatac ... tgtgtgtcagGTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTT