Sequence
atgc intronic sequence ATGC exonic sequenceGAACCGTTGTTGATTCTAAGATATGCCACCCAACGGAGTTTGATTTCTACCTCTGTAGTCATGCTGGAATCCAGgtaaaagtaatgtggatttgtggaagaccgatattactttgtgcaatcctgacattacatgttagctggaatattctaccgtacctgtcatttgtgagtg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G079080_T02 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 5'ss of exon 19
GAACCGTTGTTGATTCTAAGATATGCCACCCAACGGAGTTTGATTTCTACCTCTGTAGTCATGCTGGAATCCAGgtaaaagtaatgtgga----tttgtggaagaccgatattactttgtgcaatcctgacattacatgttagctggaatattctaccgtacctgtcatttgtgagtg---
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GAACTGTTGTTGATTCAAAGATCTGCCACCCATCAGAGTTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAGgtaagaatattgtagtggtccttttgtaaggctgacat-atactg----aacttgtcgttactc--tggtccccatgtcttctgtgattaagtatttgaggagactt
upper sequence: GRMZM2G079080_T02 (Zea mays), 5'ss of exon 19
lower sequence: GLYMA10G00530.1 (Glycine max), 5'ss of exon 11
GAACCGTTGTTGATTCTAAGATATGCCACCCAACGGAGTTTGATTTCTACCTCTGTAGTCATGCTGGAATCCAGgtaaaag-taatgtggatttgtggaagaccgatatta--ctttgtgcaatcctgacattacatgttagctggaatattctaccgtacctgtcatttgtgagtg
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GGACTGTAGTTGATTCCAAAATCTGTCATCCAACAGAATTTGATTTTTATCTCTGTAGTCATGCTGGCATCCAGgtagaagatagttttattttttctctcttctatactgatctttatgagtaacgatgattggtcatgaaacaagacattttagcaaagatggtacctgtca---
upper sequence: GRMZM2G079080_T02 (Zea mays), 5'ss of exon 19
lower sequence: EFJ15357 (Selaginella moellendorffii), 5'ss of exon 20
GAACCGTTGTTGATTCTAAGATATGCCACCCAACGGAGTTTGATTTCTACCTCTGTAGTCATGCTGGAATCCAGgtaaaag----taatgtggatttgtggaagaccgatattactttgtgcaatcctgacattacatgttagctggaatattctaccgtacctgtcatttgtgagtg
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GTACTGTGGTGGATACGAAGATCTGTCATCCCACGGAATTTGATTTCTACCTCTGCAGTCACGCTGGAATACAGgtacgaaggcacagcgttaacctgattgaggctgatggtcgtgactgcgaccct-acag---------------------------------------------
upper sequence: GRMZM2G079080_T02 (Zea mays), 5'ss of exon 19
lower sequence: EFJ19862 (Selaginella moellendorffii), 5'ss of exon 18
GAACCGTTGTTGATTCTAAGATATGCCACCCAACGGAGTTTGATTTCTACCTCTGTAGTCATGCTGGAATCCAGgtaaaagtaatgtggatttgtggaagaccgatattactttgtgca-atcctgacattacatgttagctggaatattctaccgtacctgtcatttgtgagtg
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GCACTGTGGTGGATTCGAAGATTTGCCATCCAACGGAGTTTGACTTCTACCTTTGCAGCCATGCCGGCATTCAGgtaaca-tgatggcaccctg------gcctttgtagctttgctcatacgacgagactatgttacag-----------------------------------
upper sequence: GRMZM2G079080_T02 (Zea mays), 5'ss of exon 19
lower sequence: EFJ14096 (Selaginella moellendorffii), 5'ss of exon 18
GAACCGTTGTTGATTCTAAGATATGCCACCCAACGGAGTTTGATTTCTACCTCTGTAGTCATGCTGGAATCCAGgtaaaagtaatgtggatttgtggaagaccgatattactttgtgca-atcctgacattacatgttagctggaatattctaccgtacctgtcatttgtgagtg
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GCACTGTGGTGGATTCGAAGATTTGCCATCCAACGGAGTTTGACTTCTACCTTTGCAGCCATGCCGGCATTCAGgtaagt-tgatggagccctg------gcctttgtagctttgctcatacgacgagattatgttacag-----------------------------------
upper sequence: GRMZM2G079080_T02 (Zea mays), 5'ss of exon 19
lower sequence: EFJ14095 (Selaginella moellendorffii), 5'ss of exon 18
GAACCGTTGTTGATTCTAAGATATGCCACCCAACGGAGTTTGATTTCTACCTCTGTAGTCATGCTGGAATCCAGgtaaaagtaatgtggatttgtggaagaccgatattactttgtgca-atcctgacattacatgttagctggaatattctaccgtacctgtcatttgtgagtg
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GCACTGTGGTGGATTCGAAGATTTGCCATCCAACGGAGTTTGACTTCTACCTTTGCAGCCATGCCGGCATTCAGgtaact-tgatggagccctg------gcctttgtagctttgctcatacgacgagactatgttacag-----------------------------------
upper sequence: GRMZM2G079080_T02 (Zea mays), 5'ss of exon 19
lower sequence: EFJ19863 (Selaginella moellendorffii), 5'ss of exon 18
GAACCGTTGTTGATTCTAAGATATGCCACCCAACGGAGTTTGATTTCTACCTCTGTAGTCATGCTGGAATCCAGgtaaaagtaatgtggatttgtggaagaccgatattactttgtgca-atcctgacattacatgttagctggaatattctaccgtacctgtcatttgtgagtg
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GCACTGTGGTGGATTCGAAGATTTGCCATCCAACGGAGTTTGACTTCTACCTTTGCAGCCATGGCGGCATTCAGgtaact-tgatggagccctg------gcctttgtagctttgctcatacgacgagactatgttacag-----------------------------------
upper sequence: GRMZM2G079080_T02 (Zea mays), 5'ss of exon 19
lower sequence: EFJ24991 (Selaginella moellendorffii), 5'ss of exon 20
GAACCGTTGTTGATTCTAAGATATGCCACCCAACGGAGTTTGATTTCTACCTCTGTAGTCATGCTGGAATCCAGgtaaaag----taatgtggatttgtggaagaccgatattactttgtgcaatcctgacattacatgttagctggaatattctaccgtacctgtcatttgtgagtg
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GTACTGTGGTGGATACGAAGATCTGTCATCCCACGGAATTTGATTTCTACCTCTGCAGTCACGCTGGAATACAGgtacgaaggcacagcgtcaacctgattgaggctgatggttgtgactgcgaccctgcag----------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6021559|gb|AW066487.1|AW066487EST: GCCACCCAACGGAGTTTGATTTCTACCTCTGTAGTCATGCTGGAATCCAG GGAACGAGTAGGCCTGCTCACTACCATGTCCTCTGGGATGAGAACAATTTC
genomic: GCCACCCAACGGAGTTTGATTTCTACCTCTGTAGTCATGCTGGAATCCAGgtaaaagtaa ... agtttgccagGGAACGAGTAGGCCTGCTCACTACCATGTCCTCTGGGATGAGAACAATTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAACCGTTGTTGATTCTAAGATATGCCACCCAACGGAGTTTGATTTCTACCTCTGTAGTCATGCTGGAATCCAGgtaaaagtaatgtggatttgtggaagaccgatattactttgtgcaatcctgacattacatgttagctggaatattctaccgtacctgtcatttgtgagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA