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GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttatgctttgtcatttagattccaatttagtgatgtttttatttacttagtaaataaagttctgaatgagcactcatgtctggaacactaactgtgcag
species | Zea mays |
transcript | GRMZM2G064023_T04 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCAEST: gi|6020672|gb|AW065480.1|AW065480
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCAEST: gi|5847106|gb|AW000185.1|AW000185
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCAEST: gi|67022591|gb|CO451340.1|CO451340
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCAEST: gi|32859372|gb|CD999053.1|CD999053
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCAEST: gi|71450119|gb|DR831169.1|DR831169
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATTTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCAEST: gi|4776524|gb|AI665527.1|AI665527
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCAEST: gi|76284364|gb|DV023932.1|DV023932
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATTTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCAEST: gi|31361873|gb|CD446230.1|CD446230
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATTTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCAEST: gi|149082724|gb|EE171942.2|EE171942
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATTTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCA
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGATAGGATCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttatgctttgtcatttagattccaatttagtgatgtttttatttacttagtaaataaagttctgaatgagcactcatgtctggaacactaactgtgcag
- - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC