Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggtaccagattgatcacaatttttcactcctttggtttcagcctactggttatgaacaccactctttgcccatgttttctcag

Basic information

species Zea mays
transcript GRMZM2G064023_T01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064023_T01 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os11g33240.2 (Oryza sativa), 5'ss of exon 17
GTGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggtaccagattgatcacaatttttcactcctttggtttcagcctactggttatgaacaccactctttgcccatgttttctcag
|| |||||||| |||||||| || ||||| |||||||||||||| || |||||||||    || ||||||||||  |||  | ||   |||   | || | || ||| ||  ||       | ||| |||| ||| |    
GTCTCCAAGTTGTATGAAGTTGTGCCTCCAATCCTCACTGAGCTTGGCAAGgtaatgc--cactagattgatcatgattgct-accgttttatgtccatcttattggctaaaaagtgacaacattgtccatatttccag--

upper sequence: GRMZM2G064023_T01 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 17
GTGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggtaccagattgatcacaatttttcactcctttggtttcagcctactggttatgaacaccactctttgcccatgttttctcag------------------
|| |||||||| |||||||| || ||||| |||||||||||||| || |||||||||   ||| ||||||||||  | || |  |||||||  || | ||    |   | |     |  ||| ||| | | |   |   |                   
GTCTCCAAGTTGTATGAAGTTGTGCCTCCTATCCTCACTGAGCTTGGCAAGgtaatgc--tactagattgatcaataattattgctcctttaattacggctccttcagtttacttccatctcattggctaagaaataagaacatccttcacattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211314254|gb|FK994154.1|FK994154
EST:     TGTCCTTTTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG                         GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: gi|6020672|gb|AW065480.1|AW065480
EST:     TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG                         GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: gi|5847106|gb|AW000185.1|AW000185
EST:     TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG                         GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: gi|67022591|gb|CO451340.1|CO451340
EST:     TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG                         GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: gi|32859372|gb|CD999053.1|CD999053
EST:     TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG                         GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: gi|71450119|gb|DR831169.1|DR831169
EST:     TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG                         GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: gi|4776524|gb|AI665527.1|AI665527
EST:     TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG                         GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: gi|76284364|gb|DV023932.1|DV023932
EST:     TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG                         GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: gi|6952534|gb|AW424602.1|AW424602
EST:     TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG                         GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGCGGAGTTTTGCTGAAC
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: gi|31361873|gb|CD446230.1|CD446230
EST:     TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG                         GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: gi|149082724|gb|EE171942.2|EE171942
EST:     TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG                         GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC