1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
AAGAGAGGTCATTGATGAGGATGGTTGGTTACATACTGGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAGgtaaagctgaacgatgtcttctcgtgtccagtttttcttttggggttgagtttgtgactgaagtacctactacctacgtgtcttgtgctttcatttagat...
species | Zea mays |
transcript | GRMZM2G059381_T01 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAG GAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAEST: gi|87153602|gb|DY398391.1|DY398391
genomic: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAGgtaaagctga ... tgggttgaagGAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAA
EST: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAG GAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAEST: gi|19350747|gb|BM895279.1|BM895279
genomic: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAGgtaaagctga ... tgggttgaagGAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAA
EST: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAG GAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAEST: gi|60395514|gb|DN228384.1|DN228384
genomic: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAGgtaaagctga ... tgggttgaagGAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAA
EST: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAG GAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAEST: gi|58030032|gb|CX725459.1|CX725459
genomic: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAGgtaaagctga ... tgggttgaagGAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAA
EST: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAG GAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAEST: gi|93283329|gb|EB675593.1|EB675593
genomic: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAGgtaaagctga ... tgggttgaagGAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAA
EST: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAG GAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAEST: gi|32847207|gb|CD986888.1|CD986888
genomic: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAGgtaaagctga ... tgggttgaagGAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAA
EST: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAG GAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAEST: gi|211308069|gb|FL216534.1|FL216534
genomic: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAGgtaaagctga ... tgggttgaagGAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAA
EST: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAG GAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAA
genomic: GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAGgtaaagctga ... tgggttgaagGAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAGAGGTCATTGATGAGGATGGTTGGTTACATACTGGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTCTAAAAATTATAGATAGgtaaagctgaacgatgtcttctcgtgtccagtttttcttttggggttgagtttgtgactgaagtacctactacctacgtgtcttgtgctttcatttagat
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