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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaaatattgctccgttcctgtaaacatttttgttccaccctactgctttccctcccctgttcaagtatataacttttgtcaaacctgtggcacatctgtag

Basic information

species Zea mays
transcript GRMZM2G057576_T01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 19
TGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaaatattgctccgttcctgtaaacatttttgttccaccctactgctttccctcccctgttcaagtatataacttttgtc-aaacctgtggcacatctgtag
|||||||||||||||||| |||||||| ||||||||  | |||||||||||||||||||| ||||| ||||| || || |||||||| |||||||| ||||||    ||||| | ||    | ||| ||         ||||  |   |  | || |   ||   |  | | | | || || |||| |||| || ||||| ||
TGTTGAGTTCTTTGGCACTCTTTCAAGAGAGTGGGCTTTGGAGTGCATGAAGGACCTTCTGCTGGTCAATCTAAGAGGGAATCTTCAAATTGTTGTACAGgtat---ttgctacatttagtttaacctt---------cccttttttgtcacttctcacatt---ggttctgattattatcgaaacatgtgtcatatctgcag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 19
TGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaaatattgctccgttcctgtaaacatttttgttccaccctactgctttccctcccctgttcaagtatataacttttgtc-aaacctgtggcacatctgtag
|||||||||||||||||| |||||||| ||||||||  | |||||||||||||||||||| ||||| ||||| || || |||||||| |||||||| ||||||  | ||||| ||||    ||      ||||  |  ||||  |   |  | || |   ||   |  | | | | || || |||| |||| || ||||| ||
TGTTGAGTTCTTTGGCACTCTTTCAAGAGAGTGGGCTTTGGAGTGCATGAAGGACCTTCTGCTGGTCAATCTAAGAGGGAATCTTCAAATTGTTGTACAGgtattt-ttgctacgtt----tag-----tttgaccttcccttttttgtcacttctcacatt---ggttctgattattatcgaaacatgtgtcatatctgcag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 19
TGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgta--aatattgctc--cgttcctgtaaacatttttgttccaccctactgctttccctcccctgttcaagtatataacttttgtcaaacctgtggcacatctgtag
 |||||||||||||| ||||||||  | || |||||||| ||||| ||||| || ||| |||| || ||||| ||||| |||||||| ||  |||||||||||    |  ||      ||| |  |||  |||  ||||| |   || |  ||    ||| |  ||||  ||||  |      ||  ||  ||     || |  ||
AGTTGAGTTCTTTGGAACCCTTTCTCGAGAATGGGCACTTGAGTGTATGAAAGATCTTTTACTTGTCAATCTTAGGGGCAATCTTCAAATAATTGTGCAGgtactgtttctgtataatgttgccataag-attcatgttctattttattttttgaattccacaattcatctataaga---gaatcttactagtacatgatttacag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 19
TGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgta--aatattgctccgttcctgta-aacatttttgttccaccctactgctttccctcccctgttcaagtatataacttttgtcaaacctgtggcacatctgtag
 |||||||||||||| ||||||||  | || |||||||| ||||| ||||| || ||| |||| || ||||| ||||| |||||||| ||  |||||||||||    |  ||     ||     | || | |  ||||| |   || |  ||    ||| |  ||||  ||||  |      ||  ||  ||      | || ||
AGTTGAGTTCTTTGGAACCCTTTCTCGAGAATGGGCACTCGAGTGTATGAAAGATCTTTTACTTGTCAATCTTAGGGGCAATCTTCAAATAATTGTGCAGgtactgtttctggataattttgccataagagtcatgttctattttattttttgaattccgcaattcatctataaga---aaatcttactagtacatggtttgcag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 17
TGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaa-atattgctccgttcctgtaaacatttttgttccaccctactgctttccctcccctgttcaag-----tatataacttttgtcaaa----cctg-tggcacat---ctgtag
 |||||||||||||| ||||||||||  || ||||| |||||||||||||| || ||| ||||||| || || ||||| || ||||| ||  |||||||||||   ||||    | |    ||    ||  |  |||||   || |  |  |  |   || ||   |     | ||||| ||   | |||    | |  | | ||||    || ||
AGTTGAGTTCTTTGGAACCCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTGTGCAGgtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatctttttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 19
TGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaa-atattgctccgttcctgtaaacatttttgttccaccctactgctttccctcccctgttcaag------tatataacttttgtcaaa----cctg-tggcacatctgtag---
 |||||||||||||| || |||||||  || ||||| |||||||||||||| || ||| ||||||| || || ||||| || ||||| ||  |||||||||||   ||||    | |    ||    ||  |  |||||   || |  || |  |    | ||   |      | ||||| || | | |||    | |  | | ||||   | |   
AGTTGAGTTCTTTGGAACTCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTGTGCAGgtactgtattagggcttggtagtcggtataatgtttccatgatattttttacaattatatttttttgggtttttttataatttctataaaagaatcttactagtacattatttgcag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 17
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 19
TGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaaatattgctccgttcctgtaaacatttttgttccaccctactgctttccctcccctgttcaagtatataacttttgtcaaacctgtggcacatctgtag
||||||||| |||||||| ||||| || ||||||||  | |||||||||||||| ||  | ||||| || ||||| || ||||| |||||  |||| |||| || |  || |  | |    | ||  || ||| |  |   |    ||  |  |  ||  | ||| |  |                                
TGTTGAGTTTTTTGGCACTCTTTCTAGCGAGTGGGCTATGGAGTGCATGAAGGATCTGTTGCTGGTCAACCTGAGAGGCAATCTGCAGATAATTGTTCAGgcaagtggtg-tatgatatgatgaatcttattggtt-attttgacactaacggtgtcc-atacaatttcag-------------------------------

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 17
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 19
TGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaaa-tattgctccgttcctgtaaacattt-ttgttccaccctactgctttccctcccctgttcaagtatataacttttgtcaaacctgtggcacatctgtag
||||||||||||||| || |||||||| || ||||| || ||||| ||||| ||||||||||| || |||||  | |  |||||||||||  ||||||||||||| || || |  ||   ||| |  |||  || ||||||  |    | |         ||    | ||  | | || ||                       
TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgtaaaatagtgttttgtatatgtgattattgattattccacatt----cataaaaaattgtggctcactaagtcatttgtgcag--------------------

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 17
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 19
TGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaaatattgctccgttcctgtaaacatttttgttccaccctactgctttccctcccctgttcaagtatataacttttgtcaaacctgtggcacatctgtag
||| ||||||||||| || |||||| | || |||||  | |||||||||||||||||||| ||||| ||||| || || || ||||||||  |||| ||||||   ||   |   |||   |  |   |   | || ||  |      ||   ||     |||    ||||   | |   ||                    
TGTAGAGTTCTTTGGTACGCTTTCACGAGAATGGGCTTTGGAGTGCATGAAGGACCTTCTTCTGGTCAATCTAAGAGGCAACCTTCAGATAATTGTTCAGgtacccatcattgtcttctgatggatgatccagatcgact-tgtaaacttatttcttgctttcgctaatattggtctgtgcag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15188223|gb|BI417200.1|BI417200
EST:     AGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAG                         GCTGCGAAAGAATATT
genomic: AGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaaatattg ... acatctgtagGCTGCGAAAGAATATT
EST: gi|22489541|gb|BU049464.1|BU049464
EST:     AGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAG                         GCTGCGAAAGAATATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTA
genomic: AGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaaatattg ... acatctgtagGCTGCGAAAGAATATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTA
EST: gi|18053133|gb|BM318791.1|BM318791
EST:     AGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAG                         GCTGCGAAAGAATATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTA
genomic: AGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaaatattg ... acatctgtagGCTGCGAAAGAATATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTA
EST: gi|15313673|gb|BI478897.1|BI478897
EST:     AGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAG                         GCTGCGAAAGAATAT
genomic: AGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaaatattg ... acatctgtagGCTGCGAAAGAATAT
EST: gi|32928656|gb|CF033468.1|CF033468
EST:     AGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAG                         GCTGCGAAAGAATATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTA
genomic: AGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaaatattg ... acatctgtagGCTGCGAAAGAATATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTA
EST: gi|88758497|gb|DY542866.1|DY542866
EST:     AGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAG                         GCTGCGAAAGAATATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTA
genomic: AGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaaatattg ... acatctgtagGCTGCGAAAGAATATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTA
EST: gi|32929052|gb|CF033864.1|CF033864
EST:     AGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAG                         GCTGCGAAAGAATATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTA
genomic: AGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaaatattg ... acatctgtagGCTGCGAAAGAATATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTA