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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTATGAACATTCTAGAGCGTCATGCTAGCTATTTGATGTCTGGCAAGGAGCTTTCTAAACTCGTTGCTTTTGTCAAGGGGACTCAATTTGATCTTGTGgtgagactcctgtcattcatcaccttgacaaatcttattgtccaaagtcgtttgtaattgatctgtgttgtaacatcatgcag

Basic information

species Zea mays
transcript GRMZM2G052750_T01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052750_T02 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os02g54500.1 (Oryza sativa), 5'ss of exon 18
TGTTATGAACATTCTAGAGCGTCATGCTAGCTATTTGATGTCTGGCAAGGAGCTTTCTAAACTCGTTGCTTTTGTCAAGGGGACTCAATTTGATCTTGTGgtgagactcctgtcattcatcaccttgacaaatcttattg-tccaaagtcgtttgtaattgatctgtgttgtaacatcatgcag
||| ||||| ||||| |||   |||||||||||||||||||||||||||||||||||||| || ||||||||||| || || ||||| |||||||||||||| ||| |       ||||||| | | || | |||| ||| ||||||  |   ||| ||| || | | || |||| | ||||||
TGTCATGAATATTCTGGAGAACCATGCTAGCTATTTGATGTCTGGCAAGGAGCTTTCTAAGCTGGTTGCTTTTGTGAAAGGAACTCAGTTTGATCTTGTGgtaagattttcactgttcatcatcattaccagtcttgttgatccaaaaccacatgttattaatatat-ttataactttatgcag

upper sequence: GRMZM2G052750_T02 (Zea mays), 5'ss of exon 18
lower sequence: Vv15s0046g01890.t01 (Vitis vinifera), 5'ss of exon 19
TGTTATGAACATTCTAGAGCGTCATGCTAGCTATTTGATGTCTGGCAAGGAGCTTTCTAAACTCGTTGCTTTTGTCAAGGGGACTCAATTTGATCTTGTGgtgagactcctgtcattcatcacctt--gacaaatcttattgtccaaagtcgtttgtaattgatctgtgttgtaacatcatgcag
||| |  ||||| |||||    ||||||| |||||||||||| || || || ||||| ||||| ||||| ||||| || || ||||| |||||||| ||||| |||   |  |||||  |    ||  ||| | |  |||  ||    || | || ||| |  |        || | |  | |||
TGTCAAAAACATCCTAGAAAACCATGCTAACTATTTGATGTCAGGAAAAGAACTTTCCAAACTTGTTGCATTTGTTAAAGGCACTCAGTTTGATCTAGTGgtaagaaaacc-tcatttttggttttaggactattagtatcatcagtggttgcttctaacttgttcaccaccta-cttattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87152673|gb|DY397462.1|DY397462
EST:     AGCTTTCTAAACTCGTTGCTTTTGTCAAGGGGACTCAATTTGATCTTGTG                         GAATATCTACAACGAGAAAGGCAAGGGTCTGCTCGTCTAGAGAATTTTGCT
genomic: AGCTTTCTAAACTCGTTGCTTTTGTCAAGGGGACTCAATTTGATCTTGTGgtgagactcc ... catcatgcagGAATATCTACAACGAGAAAGGCAAGGGTCTGCTCGTCTAGAGAATTTTGCT
EST: gi|211446884|gb|FL341663.1|FL341663
EST:     TGTCAAGGGGACTCAATTTGATCTTGTG                         GAATATCTACAACGAGAAAGGCAAGGGTCTGCTCGTCTAGAGAATTTTGCT
genomic: TGTCAAGGGGACTCAATTTGATCTTGTGgtgagactcc ... catcatgcagGAATATCTACAACGAGAAAGGCAAGGGTCTGCTCGTCTAGAGAATTTTGCT
EST: gi|211446492|gb|FK979151.1|FK979151
EST:     TGTCAAGGGGACTCAATTTGATCTTGTG                         GAATATCTACAACGAGAAAGGCAAGGGTCTGCTCGTCTAGAGAATTTTGCT
genomic: TGTCAAGGGGACTCAATTTGATCTTGTGgtgagactcc ... catcatgcagGAATATCTACAACGAGAAAGGCAAGGGTCTGCTCGTCTAGAGAATTTTGCT
EST: gi|211253319|gb|FL352230.1|FL352230
EST:     TGTCAAGGGGACTCAATTTGATCTTGTG                         GAATATCTACAACGAGAAAGGCAAGGGTCTGCTCGTCTAGAGAATTTTGCT
genomic: TGTCAAGGGGACTCAATTTGATCTTGTGgtgagactcc ... catcatgcagGAATATCTACAACGAGAAAGGCAAGGGTCTGCTCGTCTAGAGAATTTTGCT