1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GAGTTTGGCTAAAACAGAAGGTAGGCCAGAGCCCGCATTGTATGGAAGCGAGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAGgtgagaacaccaccaagtttgccgagtctacaaacatcaacctgcatatcgtatctactcccgaccttctctacgatctacattcttgtttctagagcat...
species | Zea mays |
transcript | GRMZM2G052403_T01 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAG GTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAAEST: gi|9794440|gb|BE552748.1|BE552748
genomic: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAGgtgagaacac ... cccgctgcagGTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAA
EST: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAG GTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAAEST: gi|44900091|gb|CK826636.1|CK826636
genomic: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAGgtgagaacac ... cccgctgcagGTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAA
EST: CGACTTCAAATCCGCCCATGAGCAG GTTTGCGCGAGTGTTCCATCCGACTCGGCAAACATGAACGAGCTTCTCCAAEST: gi|71435056|gb|DR816106.1|DR816106
genomic: CGACTTCAAATCCGCCCATGAGCAGgtgagaacac ... cccgctgcagGTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAA
EST: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAG GTTTGCGCGAGTGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAAEST: gi|32906801|gb|CF011614.1|CF011614
genomic: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAGgtgagaacac ... cccgctgcagGTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAA
EST: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAG GTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGATCTTCTCCAAEST: gi|16925353|gb|BM078421.1|BM078421
genomic: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAGgtgagaacac ... cccgctgcagGTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAA
EST: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAG GTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAAEST: gi|32944178|gb|CF048997.1|CF048997
genomic: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAGgtgagaacac ... cccgctgcagGTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAA
EST: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAG GTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAAEST: gi|6865239|gb|AW360589.1|AW360589
genomic: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAGgtgagaacac ... cccgctgcagGTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAA
EST: CTTCAAATCCGCCCATGAGCAG GTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAAEST: gi|37361499|gb|CF602788.1|CF602788
genomic: CTTCAAATCCGCCCATGAGCAGgtgagaacac ... cccgctgcagGTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAA
EST: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAG GTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAAEST: gi|60347366|gb|DN214339.1|DN214339
genomic: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAGgtgagaacac ... cccgctgcagGTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAA
EST: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAG GTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAA
genomic: AGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAGgtgagaacac ... cccgctgcagGTTTGCGCGAGCGTTTCATCCGACTCGGCAAACATGAACGAGCTTCTCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTTTGGCTAAAACAGAAGGTAGGCCAGAGCCCGCATTGTATGGAAGCGAGCACATCCGTCCTCTTAGCATAGACGACTTCAAATCCGCCCATGAGCAGgtgagaacaccaccaagtttgccgagtctacaaacatcaacctgcatatcgtatctactcccgaccttctctacgatctacattcttgtttctagagcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG