Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCTGGAATCAACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaatagtttattatacacttgaccttttttttttcttgtgctctgctagttttatcaacatgagttaatgttccaattgaacatgtgtggctcaatgtacag

Basic information

species Zea mays
transcript GRMZM2G044317_T01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044317_T06 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g22400.1 (Oryza sativa), 5'ss of exon 18
CACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCTGGAATCAACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagt-gcaatagtttattatacacttgaccttttttttttcttgtgctctgctagttttatcaacatgagttaatgttccaattga--acatgtgtggctcaatgtacag
|||  | || ||||||||   ||| |||||||| |||||| |||||||||| ||||| ||||| |||||||||||||||||||||||  ||  ||| || ||| ||  | |||||| ||| | || |                ||||||        |||| ||| |||  |   |||||| ||||||    |  |  |  | | |  ||||
CACGATGACTTTTGAGGCAGAACATGGTGTCTCATGTGATACTGGAATCAATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAGgtgggtcaccatagttgatt-tgcattca-------------tttgtgc-------attttgtcagcatatga-gatgttcaaattgacagtaatttcgttttattccacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71761935|gb|DR959872.1|DR959872
EST:     ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAA                         AACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
genomic: ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaa ... caatgtacagAACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA