1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
TGAATCCGAAAAGGTCAAAACCTGGAAGTTGGCTGACATTGTTGATAATGGACATCTTCGAGCTCTGCATTTGACAGACACAGACACTAATCCAAGCAAAgtatgatgaattgtgattaagttgtttaatcatgcatgcagaatcaaactgacacatgagttggtctttatattgatgttctaggttatgaaaatctctgatgtaggttacgtttatttctttgttccgcag
species | Zea mays |
transcript | GRMZM2G042992_T01 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: GACATCTTCGAGCCCTGCATTTGACAGACACAGACACTAATCCAAGCAAA ATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGCEST: gi|76280738|gb|DV020306.1|DV020306
genomic: GACATCTTCGAGCTCTGCATTTGACAGACACAGACACTAATCCAAGCAAAgtatgatgaa ... tgttccgcagATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGC
EST: GACATCTTCGAGCTCTGCATTTGACAGACACAGACACTAATCCAAGCAAA ATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGCEST: gi|211316883|gb|FL253819.1|FL253819
genomic: GACATCTTCGAGCTCTGCATTTGACAGACACAGACACTAATCCAAGCAAAgtatgatgaa ... tgttccgcagATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGC
EST: GACATCTTCGAGCCCTGCATTTGACAGACACAGACACTAATCCAAGCAAA ATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGCEST: gi|93014018|gb|EB639538.1|EB639538
genomic: GACATCTTCGAGCTCTGCATTTGACAGACACAGACACTAATCCAAGCAAAgtatgatgaa ... tgttccgcagATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGC
EST: GACATCTTCGAGCTCTGCATTTGACAGACACAGACACTAATCCAAGCAAA ATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGCEST: gi|76929334|gb|DV171965.1|DV171965
genomic: GACATCTTCGAGCTCTGCATTTGACAGACACAGACACTAATCCAAGCAAAgtatgatgaa ... tgttccgcagATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGC
EST: GACATCTTCGAGCTCTGCATTTGACAGACACAGACACTAATCCAAGCAAA ATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGCEST: gi|5499066|gb|AI854933.1|AI854933
genomic: GACATCTTCGAGCTCTGCATTTGACAGACACAGACACTAATCCAAGCAAAgtatgatgaa ... tgttccgcagATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGC
EST: GACATCTTCGAGCCCTGCATTTGACAGACACAGACACTAATCCAAGCAAA ATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGCEST: gi|211316881|gb|FL253817.1|FL253817
genomic: GACATCTTCGAGCTCTGCATTTGACAGACACAGACACTAATCCAAGCAAAgtatgatgaa ... tgttccgcagATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGC
EST: GACATCTTCGAGCCCTGCATTTGACAGACACAGACACTAATCCAAGCAAA ATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGCEST: gi|211316879|gb|FL253815.1|FL253815
genomic: GACATCTTCGAGCTCTGCATTTGACAGACACAGACACTAATCCAAGCAAAgtatgatgaa ... tgttccgcagATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGC
EST: GACATCTTCGAGCCCTGCATTTGACAGACACAGACACTAATCCAAGCAAA ATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGC
genomic: GACATCTTCGAGCTCTGCATTTGACAGACACAGACACTAATCCAAGCAAAgtatgatgaa ... tgttccgcagATTGTCCGTTTGTTATATACAAATAATGGGGTTGCACTCTTGGCTCTTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAATCCGAAAAGGTCAAAACCTGGAAGTTGGCTGACATTGTTGATAATGGACATCTTCGAGCTCTGCATTTGACAGACACAGACACTAATCCAAGCAAAgtatgatgaattgtgattaagttgtttaatcatgcatgcagaatcaaactgacacatgagttggtctttatattgatgttctaggttatgaaaatctctgatgtaggttacgtttatttctttgttccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA