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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGAGAGGGAGCTTTTGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttagccttttcttattttcctcaatcttgttttctttatattatcccccttctgtttcccaaggtctatggaatatggataaactgcaactcttgaaccgtttaaaagaccatcatttggaggaaactgagctatccaagtgacaggagcattatttacttaacttgatctgccttttgtatggaatgcag

Basic information

species Zea mays
transcript GRMZM2G033619_T01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033619_T01 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os03g49420.2 (Oryza sativa), 5'ss of exon 18
GTCTGAGAGGGAGCTTTTGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttagccttttcttattttcctcaatcttgttttctttatattatcccccttctgtttcccaaggtctatggaata--tggataaactgcaactcttgaaccgtttaaaagaccatcatttggaggaaactgagctatccaagtgacaggagcattatttacttaacttgatctgccttttgtatggaatgcag
     | |||||||||||||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||| |      || || ||||||| ||| ||   || ||| |  |      ||    | |   |||  ||     | |  | | |  |  |||  | ||| |  |||                                                                                         
-----ATAGGGAGCTTTTGGGTCATAACAACCAGTATCTTCCAAAGATTGTCTCTATTTTTGCGGAGgtacctat------ttatttttttccttaatttttccttttttgttctgattaact---atatagaaagaactgcaacacaactagttgcagagcag-tattggaatgtt-----------------------------------------------------------------------------------------

upper sequence: GRMZM2G033619_T01 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os03g49420.4 (Oryza sativa), 5'ss of exon 8
GTCTGAGAGGGAGCTTTTGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttagccttttcttattttcctcaatcttgttttctttatattatcccccttctgtttcccaaggtctatggaata--tggataaactgcaactcttgaaccgtttaaaagaccatcatttggaggaaactgagctatccaagtgacaggagcattatttacttaacttgatctgccttttgtatggaatgcag
||| || |||||||||||||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||| |      || || ||||||| ||| ||   || ||| |  |      ||    | |   |||  ||     | |  | | |  |  |||  | ||| |  |||                                                                                         
GTCAGATAGGGAGCTTTTGGGTCATAACAACCAGTATCTTCCAAAGATTGTCTCTATTTTTGCGGAGgtacctat------ttatttttttccttaatttttccttttttgttctgattaact---atatagaaagaactgcaacacaactagttgcagagcag-tattggaatgtt-----------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22491346|gb|BU051269.1|BU051269
EST:     TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAG                         ATATTATGTGCGGGC
genomic: TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGC
EST: gi|16925300|gb|BM078368.1|BM078368
EST:     TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAG                         ATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
genomic: TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
EST: gi|19351428|gb|BM895945.1|BM895945
EST:     TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAG                         ATATTATGTGCGGGC
genomic: TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGC
EST: gi|16926388|gb|BM079456.1|BM079456
EST:     GTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAG                         ATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
genomic: GTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
EST: gi|5030633|gb|AI714827.1|AI714827
EST:     TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAG                         ATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
genomic: TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
EST: gi|87156943|gb|DY401732.1|DY401732
EST:     TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAG                         ATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
genomic: TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
EST: gi|87151915|gb|DY396704.1|DY396704
EST:     TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAG                         ATATTATGTGCGGG
genomic: TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGG
EST: gi|78105523|gb|DV523941.1|DV523941
EST:     TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAG                         ATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
genomic: TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
EST: gi|166587713|gb|EG190265.1|EG190265
EST:     GTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAG                         ATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
genomic: GTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
EST: gi|18166327|gb|BM336166.1|BM336166
EST:     TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAG                         ATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
genomic: TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
EST: gi|14203062|gb|BG836739.1|BG836739
EST:     TGGGTCATAATAATCAGTMTCTTCCAAAGATTGTGTCTGTTTTTGMAGAG                         ATATTATGTGCGGGCAAAGATCTRGCAACAGAACAGACTGCCAGCAGGATG
genomic: TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
EST: gi|60401098|gb|DN233905.1|DN233905
EST:     TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAG                         ATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
genomic: TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
EST: gi|211177497|gb|FL246406.1|FL246406
EST:     TGGGTCATAATAATCAGTATCTTCCAAAGATTGKGTCTGTTTTTGCAGAG                         ATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
genomic: TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
EST: gi|166692936|gb|EG264559.1|EG264559
EST:     GTTTTTGCAGAG                         ATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
genomic: GTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
EST: gi|78105524|gb|DV523942.1|DV523942
EST:     TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAG                         ATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
genomic: TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
EST: gi|166659831|gb|EG294974.1|EG294974
EST:     TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAG                         ATATTATGTGCGGGCAAAG
genomic: TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGCAAAG
EST: gi|149038585|gb|EE155512.2|EE155512
EST:     TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAG                         ATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG
genomic: TGGGTCATAATAATCAGTATCTTCCAAAGATTGTGTCTGTTTTTGCAGAGgtacctttag ... tggaatgcagATATTATGTGCGGGCAAAGATCTAGCAACAGAACAGACTGCCAGCAGGATG