1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
CTGCTGTTCATGCCTTCCTTGATTCCTTGATGGATTTAGAACGTGATATACCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAGgtgcgaccatcactatgctctcacgatcttacgatagagagattcaccttgtgcagttatctcacctcatgatggctcacattaccttcccgcag
species | Zea mays |
transcript | GRMZM2G027756_T01 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAG CTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTTEST: gi|37388207|gb|CF631310.1|CF631310
genomic: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAGgtgcgaccat ... cttcccgcagCTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTT
EST: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAG CTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTTEST: gi|60338478|gb|DN205451.1|DN205451
genomic: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAGgtgcgaccat ... cttcccgcagCTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTT
EST: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAG CTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTTEST: gi|21809667|gb|BQ667985.1|BQ667985
genomic: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAGgtgcgaccat ... cttcccgcagCTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTT
EST: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAG CTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTTEST: gi|76282536|gb|DV022104.1|DV022104
genomic: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAGgtgcgaccat ... cttcccgcagCTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTT
EST: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAG CTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTTEST: gi|26557878|gb|CA830113.1|CA830113
genomic: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAGgtgcgaccat ... cttcccgcagCTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTT
EST: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAG CTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTTEST: gi|26456119|gb|CA827702.1|CA827702
genomic: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAGgtgcgaccat ... cttcccgcagCTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTT
EST: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAG CTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTTEST: gi|21987637|gb|BQ779165.1|BQ779165
genomic: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAGgtgcgaccat ... cttcccgcagCTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTT
EST: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAG CTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTTEST: gi|20208212|gb|BQ134301.1|BQ134301
genomic: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAGgtgcgaccat ... cttcccgcagCTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTT
EST: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAG CTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTT
genomic: CCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAGgtgcgaccat ... cttcccgcagCTCAAAGGATTCCTCATTGCAAGGTCTTCAGGAGACGGCGATGTCAATTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCTGTTCATGCCTTCCTTGATTCCTTGATGGATTTAGAACGTGATATACCTGGATCATGCGAAGTACTGGTTGGCAGATTGCTACACCGGCTAGGGAGgtgcgaccatcactatgctctcacgatcttacgatagagagattcaccttgtgcagttatctcacctcatgatggctcacattaccttcccgcag
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