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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAACACACATCGTGCTAGAAGTCAGTTTTTAGAAAATCACCTGGCAAAGTTATTTGAGCAAAAAATGGAAATATTCACCAAAGTTGAATACACACAGgtaatctcccagaactaactatcccccttgtccttttagaagtaaaaagttatcagcttttgatttcattaatcttctggttcgttagatatttagacaa...

Basic information

species Zea mays
transcript GRMZM2G023858_T03
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023858_T01 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os03g52770.1 (Oryza sativa), 5'ss of exon 18
ATCAAACACACATCGTGCTAGAAGTCAGTTTTTAGAAAATCACCTGGCAAAGTTATTTGAGCAAAAAATGGAAATATTCACCAAAGTTGAATACACACAGgtaatctcccagaactaactatcccccttgtccttttagaagtaaaaagttatcagcttttgatttcattaatcttctggttcgttagatat-ttagacaa--------
|||||||||||| ||||| |||||||| |||||||||||||| || ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||     |      |  |  |  |  || ||   |||     || ||  |||    ||||  ||  |  ||   |    | ||| |   ||  |   ||         
ATCAAACACACACCGTGCCAGAAGTCAATTTTTAGAAAATCATCTAGCAAAATTATTCGAGCAGAAAATGGAAATATTCACCAAAGTTGAATACACACAGgtagatatctg----ttcccttttctgttatctcctta-----aataacgtatttctttttacttctagaaaatatgaattccgtcaaggatgctttgcaccccttgtt

upper sequence: GRMZM2G023858_T01 (Zea mays), 5'ss of exon 18
lower sequence: Vv07s0005g01440.t01 (Vitis vinifera), 5'ss of exon 18
ATCAAACACACATCGTGCTAGAAGTCAGTTTTTAGAAAATCACCTGGCAAAGTTATTTGAGCAAAAAATGGAAATATTCACCAAAGTTGAATACACACAGgtaatctcccagaactaactatcccccttgtccttttagaagtaaaaagttatcagcttttgatttcattaatcttctggttcgttagatatttagacaa
 ||||| || ||  | ||  | || ||| || | ||||  || || |||||||| ||| ||||||||||||| || || || |||||||||||||||||||||            | | ||       || | ||||| |    ||  | |||  |  || || |  | | |     ||      || || |  ||    
GTCAAATACCCAAAGGGCCCGGAGCCAGCTTCTGGAAAGCCATCTAGCAAAGTTGTTTAAGCAAAAAATGGAGATTTTTACAAAAGTTGAATACACACAGgta------------tgattactggtggtgccattttaaa---taattggtattggtgttggaatgaaatgaaggagtgtgcttgtaaat-tgcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9953384|gb|BE639967.1|BE639967
EST:     AATATTCACCAAAGTTGAATACACACAG                         GAATCTGTTATTTCTACTGTCCTCAAGCTCTGCCTGAAAAGCTTGCAAGAA
genomic: AATATTCACCAAAGTTGAATACACACAGgtaatctccc ... taaatttcagGAATCTGTTATTTCTACTGTCCTCAAGCTCTGCCTGAAAAGCTTGCAAGAA
EST: gi|211470297|gb|FL449605.1|FL449605
EST:     AGTTATTTGAGCAAAAAATGGAAATATTCACCAAAGTTGAATACACACAG                         GAATCTGTTATTTCTACTGTCCTCAAGCTCTGCCTGAAAAGCTTGCAAGAA
genomic: AGTTATTTGAGCAAAAAATGGAAATATTCACCAAAGTTGAATACACACAGgtaatctccc ... taaatttcagGAATCTGTTATTTCTACTGTCCTCAAGCTCTGCCTGAAAAGCTTGCAAGAA