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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACATAATCTGTTTTCAAAAATCTTCAAAGGCAGATAGTGCTGACCGATATCGATTTCCTGACGTACCATCCTTTTTGACGTATATACGTAACCGACAGgtatctagactctagagtgtcccaagtactcactctgttctaaaacataagttgaggtttgtcctaagtctagcttctctagctttcaccaattgtacag...

Basic information

species Zea mays
transcript GRMZM2G018508_T02
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018508_T03 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os07g06950.1 (Oryza sativa), 5'ss of exon 22
GGACATAATCTGTTTTCAAAAATCTTCAAAGGCAGATAGTGCTGACCGATATCGATTTCCTGACGTACCATCCTTTTTGACGTATATACGTAACCGACAGgtatctagactctagagtgtcccaagtactcactctg--ttctaaaacataagttg---aggtttgtcctaagtctagcttc--tctagctttcaccaattgtacag
 |||||  | ||||||||||||||| ||||| |||||| |||||||| |||| |||  ||||| || ||||||||| ||  ||||||||| ||||| ||||||  |       || ||| ||||   ||  |  |||   | ||    ||  |||    |  |||   | |  ||| ||| |  | | ||  | |  |||| |    
TGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACTGCTGACCAATATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAGgtacttg------agggtgccccattcaccaatcctgaactttatgctatttgttatttacatttcctcaacttctcgctgcaatgttgcagtgaggaattatttt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37375031|gb|CF623926.1|CF623926
EST:     CCTGACGTCCCATCCTTTTTGACGTATATACGTAACCGACAG                         GTGGTCCACTTTCGTTCACTGGAGAAGCCCAAGGAGGACGATTTTTTCCTC
genomic: CCTGACGTACCATCCTTTTTGACGTATATACGTAACCGACAGgtatctagac ... taatatttagGTGGTCCACTTTCGTTCACTGGAGAAGCCCAAGGAGGACGATTTTTTCCTC
EST: gi|40286963|gb|CK327355.1|CK327355
EST:     ATCGATTTCCTGACGTCCCATCCTTTTTGACGTATATACGTAACCGACAG                         GTGGTCCACTTTCGTTCACTGGAGGAGCCCAAGGAGGACGANNNNNNNCTC
genomic: ATCGATTTCCTGACGTACCATCCTTTTTGACGTATATACGTAACCGACAGgtatctagac ... taatatttagGTGGTCCACTTTCGTTCACTGGAGAAGCCCAAGGAGGACGATTTTTTCCTC
EST: gi|60396042|gb|DN228912.1|DN228912
EST:     TCGATTTCCTGACGTACCATCCTTTTTGACGTATATACGTAACCGACNAG                         GTGGTCCACTTTCGTTCACTGGAGAAGCCCCAAGGAGGACGATTTTT
genomic: TCGATTTCCTGACGTACCATCCTTTTTGACGTATATACGTAACCGAC-AGgtatctagac ... taatatttagGTGGTCCACTTTCGTTCACTGGAGAAGCCC-AAGGAGGACGATTTTT