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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGgtgcatataaactcttttagctgttcatttacctggttgctacattttctgcgagtcaatattaccattatgttttgcag

Basic information

species Zea mays
transcript GRMZM5G864414_T02
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32926424|gb|CF031236.1|CF031236
EST:     TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG                         CTCCCAGAGACTAATAACCATAATAAGGTGACAAAGGCAGAAGCGATGAAC
genomic: TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGgtgcatataa ... tgttttgcagCTCCCAGAGACTAATAACCATAATAAGGTGACAAAGGCAGAAGCGATGAAC
EST: gi|13178646|gb|BG349904.1|BG349904
EST:     TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG                         CTCCCAGAGACTAATAGCCATAATAAGGTGACAAAGGCAGAAGCGATGAAC
genomic: TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGgtgcatataa ... tgttttgcagCTCCCAGAGACTAATAACCATAATAAGGTGACAAAGGCAGAAGCGATGAAC
EST: gi|13178680|gb|BG349938.1|BG349938
EST:     CAAAGGAAATTGGAGTTGGATTATCAG                         CTCCCAGAGACTAATAGCCATAATAAGGTGACAAAGGCAGAAGCGATGAAC
genomic: CAAAGGAAATTGGAGTTGGATTATCAGgtgcatataa ... tgttttgcagCTCCCAGAGACTAATAACCATAATAAGGTGACAAAGGCAGAAGCGATGAAC
EST: gi|111433841|gb|EE298127.1|EE298127
EST:     TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG                         CTCCCAGAGACTAATAACCATAATAAGGTGACAAAGGCAGAAGCGATGAAC
genomic: TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGgtgcatataa ... tgttttgcagCTCCCAGAGACTAATAACCATAATAAGGTGACAAAGGCAGAAGCGATGAAC
EST: gi|71448844|gb|DR829894.1|DR829894
EST:     TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG                         CTCCCAGAGACTAATAACCATAATAAGGTGACAAAGGCAGAAGCGATGAAC
genomic: TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGgtgcatataa ... tgttttgcagCTCCCAGAGACTAATAACCATAATAAGGTGACAAAGGCAGAAGCGATGAAC
EST: gi|71417221|gb|DR803973.1|DR803973
EST:     TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG                         CTCCCAGAGACTAATAACCATAATAAGGTGACAAAGGCAGAAGCGATGAAC
genomic: TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGgtgcatataa ... tgttttgcagCTCCCAGAGACTAATAACCATAATAAGGTGACAAAGGCAGAAGCGATGAAC
EST: gi|13558780|gb|BG550135.1|BG550135
EST:     TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG                         CTCCCAGAGACTAATAACCATAATAAGGTGACAAAGGCAGAAGCGATGAAC
genomic: TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGgtgcatataa ... tgttttgcagCTCCCAGAGACTAATAACCATAATAAGGTGACAAAGGCAGAAGCGATGAAC
EST: gi|16378277|gb|BI992368.1|BI992368
EST:     TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG                         CTCCCAGAGACTAATAACCATAATAAGGTGACAAAGGCAGAAGCGATGAAC
genomic: TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGgtgcatataa ... tgttttgcagCTCCCAGAGACTAATAACCATAATAAGGTGACAAAGGCAGAAGCGATGAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGgtgcatataaactcttttagctgttcatttacctggttgctacattttctgcgagtcaatattaccattatgttttgcag

- - - - - AAGGAA
- - - - - - - -  TTGGAG