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AGCAAATGGAATAAGTGGTGATTTCGAGTCCTTGTGCAATAATCCAAGAACAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaatatgattgttcttttgttttgctttttccactaattcttgtctgcttcctactggtgcacatatcataactcgacttgtttcctcag
species | Zea mays |
transcript | GRMZM5G861300_T01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCTCAGGTTNTGAATTCGTAAAGGATGTGCACCTGGAACCAGTEST: gi|32867684|gb|CF007366.1|CF007366
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCTAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|149085680|gb|EE175194.2|EE175194
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|60349480|gb|DN216453.1|DN216453
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|37375449|gb|CF624162.1|CF624162
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|5871186|gb|AW017657.1|AW017657
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|32933924|gb|CF038736.1|CF038736
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCTAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCEST: gi|12968428|gb|BG265374.1|BG265374
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACC
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTATAGTATGTGCACCTGGAACCAGTACCGTTTEST: gi|44900657|gb|CK827202.1|CK827202
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: GTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|60341396|gb|DN208369.1|DN208369
genomic: GTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|9825060|gb|BE575262.1|BE575262
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|5650372|gb|AI920732.1|AI920732
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|5739914|gb|AI947604.1|AI947604
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|21987161|gb|BQ778689.1|BQ778689
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|71431663|gb|DR812713.1|DR812713
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|7227832|gb|AW566473.1|AW566473
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|60355518|gb|DN222491.1|DN222491
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|26558144|gb|CA830379.1|CA830379
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|32868239|gb|CF007921.1|CF007921
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCTAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|32867685|gb|CF007367.1|CF007367
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCTAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTTEST: gi|28982597|gb|BQ538182.2|BQ538182
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
EST: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGG CTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
genomic: CAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaata ... gtttcctcagCTCAAAGGTTTTGAATTCGTAAAGGATGTGCACCTGGAACCAGTACCGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAAATGGAATAAGTGGTGATTTCGAGTCCTTGTGCAATAATCCAAGAACAAAAGAATACATTTTAGGAGAGCTGTCAAGAATAGGAAAAGAGAAGAGGgtgaggaatatgattgttcttttgttttgctttttccactaattcttgtctgcttcctactggtgcacatatcataactcgacttgtttcctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG