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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGACTGGGAGTCATCCTTGAGTGGTCAGGCCATTTTATGATGCTTGGTTACTACACATTCCTTTCTACCTATATTGATCCGATCCTGAGgtacaactgttgtcacctgtacctaatatcaaaattctcacttttgacatctaagagtctgacgtgcttccgatttttataatattttgaag

Basic information

species Zea mays
transcript GRMZM5G851815_T02
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G851815_T01 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os08g32630.2 (Oryza sativa), 5'ss of exon 17
--------GTTGGACTGGGAGTCATCCTTGAGTGGTCAGGCCATTTTATGATGCTTGGTTACTACACATTCCTTTCTACCTATATTGATCCGATCCTGAGgtacaactgttgtcacctgtacctaatatcaaaattctcacttttgacatctaagagtctgacgtgcttccgatttttataatattttgaag
        | |||||  |||||||| ||| | ||||||||||||||| |||||||||||||||| ||||||||||| |||| ||| || || ||||| ||||| || |||||||| || |  |||| |||    || |||  |   |||    | |  |  | ||   | |  |||| ||||  ||||||||
TGCTTTAGGCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgttgtcatctatctctaacatcg---ttatcatat---acacaacatatccatatgttgatgctgttttcataac-ttttgaag

upper sequence: GRMZM5G851815_T01 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os08g32630.5 (Oryza sativa), 5'ss of exon 16
GTTGGACTGGGAGTCATCCTTGAGTGGTCAGGCCATTTTATGATGCTTGGTTACTACACATTCCTTTCTACCTATATTGATCCGATCCTGAGgtacaactgttgtcacctgtacctaatatcaaaattctcacttttgacatctaagagtctgacgtgcttccgatttttataatattttgaag
| |||||  |||||||| ||| | ||||||||||||||| |||||||||||||||| ||||||||||| |||| ||| || || ||||| ||||| || |||||||| || |  |||| |||    || |||  |   |||    | |  |  | ||   | |  |||| ||||  ||||||||
GCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgttgtcatctatctctaacatcg---ttatcatat---acacaacatatccatatgttgatgctgttttcataac-ttttgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211191425|gb|FL472422.1|FL472422
EST:     ATGCTTGGTTACTACACATTCCTTTCTACCTATATTGATCCGATCCTGAG                         GTCTTGGGTGGAATCCTTGCCCCCACGGGACAAATATCAGTGGAAACGGTA
genomic: ATGCTTGGTTACTACACATTCCTTTCTACCTATATTGATCCGATCCTGAGgtacaactgt ... tattttgaagGTCTTGGGTGGAATCCTTGCCCCCACGGGACAAATATCAGTGGAAACGGTA
EST: gi|211191424|gb|FL472421.1|FL472421
EST:     ATGCTTGGTTACTACACATTCCTTTCTACCTATATTGATCCGATCCTGAG                         GTCTTGGGTGGAATCCTTGCCCCCACGGGACAAATATCAGTGGAAACGGTA
genomic: ATGCTTGGTTACTACACATTCCTTTCTACCTATATTGATCCGATCCTGAGgtacaactgt ... tattttgaagGTCTTGGGTGGAATCCTTGCCCCCACGGGACAAATATCAGTGGAAACGGTA