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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAGGTTGACGAATTTTGTGGGAATTCTTAGTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgtaattcactatttgtttcaagtgtagcatcagtcaaagtgttggttgaaaacaattatgtgatgatgctcctcgtttctttgacag

Basic information

species Zea mays
transcript GRMZM5G831712_T01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G831712_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os07g23110.1 (Oryza sativa), 5'ss of exon 17
GTTCAAGGTTGACGAATTTTGTGGGAATTCTTAGTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta-attcac----tatttgtttcaagtgtagcatcagtcaaagtgttggttgaaaacaattatgtgatgatgctcctcgtttctttgacag
||||||||||||| |||| ||| ||||| ||||||||||| |||||||| |||||||||||||| || || || |||||||||||| | | |   |||||    ||  || ||||| |||||||   |  ||||  |||||||||    |||| |  ||     |   | ||   |  ||||
GTTCAAGGTTGACCAATTATGTTGGAATACTTAGTCAAGGACTAAGAATAGCACCTCCTGAGGCTCCCGTGACAGGCTATATGgtttgctctttgttcacttcataaatggttcaactgtagcactggcaaaag-attggttgaatttgattaagctat-----tttcctttcaatcaacag

upper sequence: GRMZM5G831712_T02 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA03G31820.1 (Glycine max), 5'ss of exon 18
GTTCAAGGTTGACGAATTTTGTGGGAATTCTTAGTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta--attcactatttgtttcaagtgtagcatcagtcaaagtgttggttgaaaacaattatgtgatgatgctcctcgtttctttgacag------------------
|||| |||||||| || |||||||| |||||||  ||||| || ||||||||||||||||| || || | |||||||||||||||||  | ||  | || |   |  |  |   | |    |   | | | | |||| |  ||| |  ||  | |   | | |       ||                         
GTTCTAGGTTGACAAACTTTGTGGGCATTCTTAACCAAGGACTCAGAATTGCACCTCCTGAAGCCCCGGCTACTGGCTATATGgttctatctattactcccctctcatgcctcctttttttttgcttatacttttggatacaaatacctaattaactttccacagaagcactaaagtctgaatattttgcattgcag

upper sequence: GRMZM5G831712_T02 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA19G34580.1 (Glycine max), 5'ss of exon 17
GTTCAAGGTTGACGAATTTTGTGGGAATTCTTAGTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta--attcactatttgtttcaagtgtagcatcagtcaaagtgttggttgaaaacaattatgtgatgatgctcctcgtttctttgacag------------------
|||| |||||||| || |||||||| |||||||| ||||| || ||||||||||||||||| || || |  ||||||||||||||||  | ||  | || |   |  |  |   | |    |   | | | | |||| |   || |  ||  | |   | | |  |    ||                         
GTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATGgttctatctattactcccctctcatgcctcctttttttttgcttatatttttggatactaatacctaattaactttccacaacagaactaaagtctgaatattttgctttgcag

upper sequence: GRMZM5G831712_T02 (Zea mays), 5'ss of exon 17
lower sequence: Vv07s0005g03040.t01 (Vitis vinifera), 5'ss of exon 17
GTTCAAGGTTGACGAATTTTGTGGGAATTCTTAGTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgt-tgtaattcactattt-gtttcaagtgtag--catcagtca---aag--tgttggttgaaaacaatt---atgtgatgatgctc---ctcgtttctttgacag--------------------
||||  ||||||| || |||||||| || ||||||||||| || ||||| || |||||||| || || |  ||||||||||||||   | | |   || || |||  |||       ||  ||| |||||   ||   | ||   || |    |||   || | |  |  | |   |    |  ||   ||                     
GTTCCCGGTTGACAAACTTTGTGGGTATACTTAGTCAAGGACTGAGAATAGCTCCTCCTGAAGCTCCAGCAACTGGCTATATGgtctttctctctctccctctttcattttgtacacagatcataagtcattcaatcttctttactgtagttcattttcattttaaaacacacaaacatactcattaatcattgcaatcttatttattgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|61119038|gb|DN559999.1|DN559999
EST:     GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
EST: gi|60351643|gb|DN218616.1|DN218616
EST:     GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
EST: gi|60394841|gb|DN227710.1|DN227710
EST:     GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
EST: gi|94475980|gb|EB704938.1|EB704938
EST:     GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
EST: gi|60345790|gb|DN212763.1|DN212763
EST:     GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
EST: gi|211088584|gb|FL093443.1|FL093443
EST:     GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
EST: gi|60350335|gb|DN217308.1|DN217308
EST:     GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
EST: gi|94475979|gb|EB704937.1|EB704937
EST:     AAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: AAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC