Sequence
atgc intronic sequence ATGC exonic sequenceTGGCTCTGTACATGCATTTTGCTACATCAGTTATTCATGAGATCACCAATGCACTCGGGATCCACTGCTTCAGgttttaatcctcatcttctcatcttttgcacatgtttgtaccatcagttagttgacgcaaagcttgtcctgtgacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G466281_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g02750.3 (Oryza sativa), 5'ss of exon 15
---------------------------TGGCTCTGTACATGCATTTTGCTACATCAGTTATTCATGAGATCACCAATGCACTCGGGATCCACTGCTTCAGgttt-taatcctcatcttctcatcttttgcacatgtt-tgtaccatcagttagttgacgcaaagcttgtcctgtgacag---
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TCTCACTATTTTGATCAATTTTGGCAGTGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgttagtcactgctatgcacttcatttctgccattttgtatcaaatgtttgacacgaggttttttgtgtggtgacag
upper sequence: GRMZM2G466281_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g02750.1 (Oryza sativa), 5'ss of exon 17
TGGCTCTGTACATGCATTTTGCTACATCAGTTATTCATGAGATCACCAATGCACTCGGGATCCACTGCTTCAGgttt-taatcctcatcttctcatcttttgcacatgtt-tgtaccatcagttagttgacgcaaagcttgtcctgtgacag---
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TGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgttagtcactgctatgcacttcatttctgccattttgtatcaaatgtttgacacgaggttttttgtgtggtgacag
upper sequence: GRMZM2G466281_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT3G25585.1 (Arabidopsis thaliana), 5'ss of exon 15
---------------------------TGGCTCTGTACATGCATTTTGCTACATCAGTTATTCATGAGATCACCAATGCACTCGGGATCCACTGCTTCAGgtt----ttaatcctcatcttctcatcttttgcac-atgtttgtaccatcagtt------agttgacgcaa--agcttgtcctgtgacag---
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TTCTTCTTGGATATTGTATATTCACATTGTCACTATATGCGCATTTTGCAACTTCAGTCATTCATGAGATCACAACTGCACTTGGAATCTACTGCTTCAGgttagaattaagattaagatactctttcttcttaccattttattgttttaagtttacaaaatttgacaagattaatctgttttttttcatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32799812|gb|CD952048.1|CD952048EST: GATCCGCTGCTTCAG GATCACTAGGAAAAAGGCATAGTTCCTCCGTCCACGGGCATCAGCGTTGCC
genomic: GATCCACTGCTTCAGgttttaatcc ... cctgtgacagGATCACTAGGAAAAAGGCATAGTTCCTCCGTCCACGGGCATCAGCGTTGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGCTCTGTACATGCATTTTGCTACATCAGTTATTCATGAGATCACCAATGCACTCGGGATCCACTGCTTCAGgttttaatcctcatcttctcatcttttgcacatgtttgtaccatcagttagttgacgcaaagcttgtcctgtgacag
- - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - AGATCA