1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTTGTGATGCGACCTATGTTTGGTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAGgtagtgtttggttctgcctcaatcaagaaaaatgactttctcgacttttcaaactgataaaatataagtacaaaaaattactaagggctagtttggaaac...
species | Zea mays |
transcript | GRMZM2G461569_T01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAG GCTGCTAAAGAAGCTGGTGTCGCAACGGAGTACAGACTAGAAAAGAGGGTGEST: gi|32834778|gb|CD974456.1|CD974456
genomic: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAGgtagtgtttg ... caatctgcagGCTGCTAAAGAAGCTGGTGTCGCAACGGAGTACAGACTAGAAAAGAGGGTG
EST: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAG GCTGCTAAAGAAGCTGGTGTCGCAACGGAGTACEST: gi|32932810|gb|CF037622.1|CF037622
genomic: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAGgtagtgtttg ... caatctgcagGCTGCTAAAGAAGCTGGTGTCGCAACGGAGTAC
EST: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAG GCTGTTAAAGAAGCTGGTGTCGCAACGGAGTEST: gi|213172274|gb|FM186421.1|FM186421
genomic: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAGgtagtgtttg ... caatctgcagGCTGCTAAAGAAGCTGGTGTCGCAACGGAGT
EST: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAG GCTGCTAAAGAAGCTGGTGTCGCAACGGAGTACAGACTAGAAAAGAGGGTGEST: gi|213172803|gb|FM187184.1|FM187184
genomic: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAGgtagtgtttg ... caatctgcagGCTGCTAAAGAAGCTGGTGTCGCAACGGAGTACAGACTAGAAAAGAGGGTG
EST: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAG GCTGCTAAAGAAGCTGGTGTCGCAACGGAGTACAGACTAGAAAAGAGGGTGEST: gi|76011931|gb|DT939101.1|DT939101
genomic: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAGgtagtgtttg ... caatctgcagGCTGCTAAAGAAGCTGGTGTCGCAACGGAGTACAGACTAGAAAAGAGGGTG
EST: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAG GCTGCTAAAGAAGCTGGTGTCGCAACGGAGTACAGACTAGAAAAGAGGGTGEST: gi|31358228|gb|CD442585.1|CD442585
genomic: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAGgtagtgtttg ... caatctgcagGCTGCTAAAGAAGCTGGTGTCGCAACGGAGTACAGACTAGAAAAGAGGGTG
EST: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAG GCTGCTAAAGAAGCTGGTGTCGCAACGGAGTACAGACTAGAAAAGAGGGTGEST: gi|32834768|gb|CD974446.1|CD974446
genomic: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAGgtagtgtttg ... caatctgcagGCTGCTAAAGAAGCTGGTGTCGCAACGGAGTACAGACTAGAAAAGAGGGTG
EST: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAG GCTGCTAAAGAAGCTGGTGTCGCAACGGAGTACEST: gi|32835420|gb|CD975098.1|CD975098
genomic: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAGgtagtgtttg ... caatctgcagGCTGCTAAAGAAGCTGGTGTCGCAACGGAGTAC
EST: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAG GCTGCTAAAGAAGCTGGTGTCGCAACGGAGTACEST: gi|213170447|gb|FM190520.1|FM190520
genomic: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAGgtagtgtttg ... caatctgcagGCTGCTAAAGAAGCTGGTGTCGCAACGGAGTAC
EST: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAG GCTGCTAAAGAAGCTGGTGTCGCAACGGAGTACAGACTAGAAAAGAGGGTGEST: gi|211090509|gb|FK961026.1|FK961026
genomic: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAGgtagtgtttg ... caatctgcagGCTGCTAAAGAAGCTGGTGTCGCAACGGAGTACAGACTAGAAAAGAGGGTG
EST: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGKGAGCAAG GCTGCTAAAGAAGCTGGTGTCGCAACGGGAGTACAGACTAGAAAAGAGGGT
genomic: GTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAGgtagtgtttg ... caatctgcagGCTGCTAAAGAAGCTGGTGTCGCAACGG-AGTACAGACTAGAAAAGAGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTGATGCGACCTATGTTTGGTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAGgtagtgtttggttctgcctcaatcaagaaaaatgactttctcgacttttcaaactgataaaatataagtacaaaaaattactaagggctagtttggaaac
- - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaaaa