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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTCACCAGAGAAACTGGCTGTGAAATTAGAATTTACTCTACCAGCATCATCTTATGCTACAATGGCCATAAGGGAGTTGACGAAAACTTCAACTTCGgtgacttcctgttcaattcttttttttggttttgtaaatacttaaattatctttgctactcttttttttcatcttttggtcattgaaccgaaccatttga...

Basic information

species Zea mays
transcript GRMZM2G459702_T01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G459702_T01 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os01g56620.1 (Oryza sativa), 5'ss of exon 18
-TCTGTCACCAGAGAAACTGGCTGTGAAATTAGAATTTACTCTACCAGCATCATCTTATGCTACAATGGCCATAAGGGAGTTGACGAAAACTTCAACTTCGgtgacttcc---tgttcaattcttttttttggttttgtaaatacttaaattatctttgctactcttttttttcatcttttg-gtcattgaa-----ccgaaccatttga----------
   | |     |||||||||||  | ||||||| |||||||||||||||||||||||||||||||||||| || |||||||||| ||| ||||||||||||||   |  |   |  ||   || ||| |||| ||||   || ||| ||| |   ||     |   |||  |   | || || ||| || |         | |  ||||           
GGATAT-GTTGGAGAAACTGGCCATAAAATTAGCATTTACTCTACCAGCATCATCTTATGCTACAATGGCTATTAGGGAGTTGATGAAGACTTCAACTTCGgtatttctccaattctctgatcatttctttgatttttccaa-actaaaacttagttatgagcaaatttcatctgttttctgtgtcgttaatatatttttatctttttggctgcacacag

upper sequence: GRMZM2G459702_T01 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA03G40600.1 (Glycine max), 5'ss of exon 21
TCTGTCACCAGAGA-AACTGGCTGTGAAATTAGAATTTACTCTACCAGCATCATCTTATGCTACAATGGCCATAAGGGAGTTGACGAAAACTTCAACTTCGgtga---cttcctgttc---aattcttttttttggttttgtaaatacttaaatta-tctttgctactcttttttttcatcttttggtcattgaaccgaaccatttga
 || |||  |     || | ||| | |||||    |||||||| || || |||| |||||| |||||||||||||||||| ||  ||| |||||||| || || |   |  ||  ||    || |||| | | || |  |  |  | ||  ||||| || |   |         ||| | | || ||    || ||  ||        
-CTCTCAAGATTCCCAAATCGCTCTAAAATTGAGCTTTACTCTTCCTGCTTCATGTTATGCAACAATGGCCATAAGGGAGCTGCTGAAGACTTCAACATCTgtaagcacccccaatttgaaaagtcttgtgtctgttactacaggtgctctaattaatcatgattgggaaaaacttttagcattgggaatatgcacataaa-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93016989|gb|EB642509.1|EB642509
EST:     CATCTTATGCTACAATGGCCATAAGGGAGTTGAGGAAAACTTCAACTTCG                         GTTGCTTGCCAGAAAACATTAAACGGCTGACCAAGCCTTGCAGTGTAAAAT
genomic: CATCTTATGCTACAATGGCCATAAGGGAGTTGACGAAAACTTCAACTTCGgtgacttcct ... taatgtacagGTTGCTTGCCAGAAAACATTAAACGGCTGACCAAGCCTTGCAGTGTAAAAT
EST: gi|32942225|gb|CF047044.1|CF047044
EST:     CATCTTATGCTACAATGGCCATAAGGGAGTTGACGAAAACTTCAACTTCG                         GTTGCTTGCCAGAAAACATTAAACGGCTGACCAAGCCTTGCAGTGTAAAAT
genomic: CATCTTATGCTACAATGGCCATAAGGGAGTTGACGAAAACTTCAACTTCGgtgacttcct ... taatgtacagGTTGCTTGCCAGAAAACATTAAACGGCTGACCAAGCCTTGCAGTGTAAAAT
EST: gi|37391053|gb|CF632766.1|CF632766
EST:     CATCTTATGCTACAATGGCCATAAGGGAGTTGACGAAAACTTCAACTTCG                         GTTGCTTGCCAGAAAACATTAAACGGCTGACCAAGCCTTGCAGTGTAAAAT
genomic: CATCTTATGCTACAATGGCCATAAGGGAGTTGACGAAAACTTCAACTTCGgtgacttcct ... taatgtacagGTTGCTTGCCAGAAAACATTAAACGGCTGACCAAGCCTTGCAGTGTAAAAT
EST: gi|40303670|gb|CK348057.1|CK348057
EST:     CATCTTATGCTACAATGGCCATAAGGGAGTTGACGAAAACTTCAACTTCG                         GTTGCTTGCCAGAAAACATTAAACGGCTGACCAAGCCTTGCAGTGTAAAAT
genomic: CATCTTATGCTACAATGGCCATAAGGGAGTTGACGAAAACTTCAACTTCGgtgacttcct ... taatgtacagGTTGCTTGCCAGAAAACATTAAACGGCTGACCAAGCCTTGCAGTGTAAAAT
EST: gi|67031718|gb|CO460467.1|CO460467
EST:     CATCTTATGCTACAATGGCCATGAGGGAGTTGACGAAAACTTCAACTTCG                         GTTGCTTGCCAGAAAACATTAAACGGCTGACCAAGCCTTGCAGTGTAAAAT
genomic: CATCTTATGCTACAATGGCCATAAGGGAGTTGACGAAAACTTCAACTTCGgtgacttcct ... taatgtacagGTTGCTTGCCAGAAAACATTAAACGGCTGACCAAGCCTTGCAGTGTAAAAT