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CTCCGCAAGGGCTACAGGTTCGTCGCGGTCATGCCAGGCCAGTACTCGCTCGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatgctgtgctgccagtggctgccaagtaatgagttgagttgagcagagcggaggaactgcactgcactcacgacacgactcatccttgcgtttggcaagcgcag
species | Zea mays |
transcript | GRMZM2G443985_T02 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|76019132|gb|DT946302.1|DT946302
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|74231924|gb|DT639838.1|DT639838
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|71439507|gb|DR820557.1|DR820557
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|6973455|gb|AW438149.1|AW438149
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTCGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|78083294|gb|DV511687.1|DV511687
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|78109374|gb|DV527790.1|DV527790
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGEST: gi|76014684|gb|DT941854.1|DT941854
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCG
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|71418512|gb|DR804465.1|DR804465
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|89252818|gb|DY624604.1|DY624604
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|71771028|gb|DR968965.1|DR968965
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|50324042|gb|CO519168.1|CO519168
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|93016171|gb|EB641691.1|EB641691
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|78076561|gb|DV504995.1|DV504995
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|148990681|gb|EE032078.2|EE032078
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|78084510|gb|DV512903.1|DV512903
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTNCA-GEST: gi|50337067|gb|CO532193.1|CO532193
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCT-CAAG
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|78180091|gb|DV550464.1|DV550464
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTCGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|91871743|gb|EB401700.1|EB401700
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|78109441|gb|DV527857.1|DV527857
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGAEST: gi|93012122|gb|EB637642.1|EB637642
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
EST: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAG ATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
genomic: CGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatg ... gcaagcgcagATCCATCCCTGGGGTTCCCGGGCATAACCGCCAAGGTCGAGGAGCTCAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCGCAAGGGCTACAGGTTCGTCGCGGTCATGCCAGGCCAGTACTCGCTCGACAAGCAGATCCTGCTGACATACATGGGCGCAGAGCTGTACGTAACAGgtatcacatgctgtgctgccagtggctgccaagtaatgagttgagttgagcagagcggaggaactgcactgcactcacgacacgactcatccttgcgtttggcaagcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT