Sequence
atgc intronic sequence ATGC exonic sequenceTCTTGTTGACCGTATCTTCGTTCGAATGGGAGCAAGGGATCATATTATGGCTGGCCAAAGTACATTCTTGGTGGAGCTCGAGGAGACTGCCTCAGTGCTTgtaagttcttccttggagatatgaggatttatattaatttttaattttgtatgttctcaaccgtgttcaacttttgctccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G421541_T01 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os09g24220.1 (Oryza sativa), 5'ss of exon 17
TCTTGTTGACCGTATCTTCGTTCGAATGGGAGCAAGGGATCATATTATGGCTGGCCAAAGTACATTCTTGGTGGAGCTCGAGGAGACTGCCTCAGTGCTTgtaagttcttccttggagatatgag-gatttatattaatttttaattttgt--atgttctcaaccgtgttcaacttttgctccag
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TCTTGTTGACCGTATGTTTGTTCGAATGGGAGCAAGGGATCATATTATGGCTGGGCAAAGTACGTTCTTAGTGGAGCTCATGGAAACTGCTTCTGTGCTTgtaagtttctcctccctgatatgaatggcaaacattaattttcatgttcactgatctaatattttgtgtgccactttttcttcag
upper sequence: GRMZM2G421541_T01 (Zea mays), 5'ss of exon 17
lower sequence: Vv07s0005g01370.t01 (Vitis vinifera), 5'ss of exon 17
TCTTGTTGACCGTATCTTCGTTCGAATGGGAGCAAGGGATCATATTATGGCTGGCCAAAGTACATTCTTGGTGGAGCTCGAGGAGACTGCCTCAGTGCTTgtaagttcttccttggagatatgaggattta--tattaatt-tttaattttgtatgttctcaaccgtgttcaacttt--tgctccag--------------
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ACCTGTGGACCGCATCTTTGTTAGGATGGGTGCAAAAGATAATATTATGGCTGGCCAAAGTACATTTTTAACAGAGCTTTCTGAAACTGCATCTATGCTGgtgggattcctttttctaattcaattcttttattactaaatgttccattgcttctggtc-caagtatatggtatcttgatgttttgagaagcttgtaaaga
upper sequence: GRMZM2G421541_T01 (Zea mays), 5'ss of exon 17
lower sequence: PP1S152_6V6.1 (Physcomitrella patens), 5'ss of exon 17
TCTTGTTGACCGTATCTTCGTTCGAATGGGAGCAAGGGATCATATTATGGCTGGCCAAAGTACATTCTTGGTGGAGCTCGAGGAGACTGCCTCAGTGCTTgtaagttc-ttccttggagatatgaggatttatattaattt--ttaattttgtatgt-tctcaaccgtgttcaacttttgctccag---------------------------------------------
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GCCTGTCGATCAAGTTTTTGTTAGAATGGGAGCTAGGGATAATATTATGGCTGGGCAAAGCACTTTCCTTGTTGAACTTCAGGAAACGGCTACAATGCTGgtgagtaaatttaatgagtagatgaattgtaaaagtgaattatttattcttatataaatcttctagaaacttgatgtttacggtagtcacatacaaggaatatcatatcatctgagctttctcttggacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78105701|gb|DV524119.1|DV524119EST: TCTTGGTGGAGCTCGAGGAGACTGCCTCAGTGCTT TCATCAGCTACCAAGAATTCTCTTGTGGTGTTAGATGAGCTTGGACGGGGT
genomic: TCTTGGTGGAGCTCGAGGAGACTGCCTCAGTGCTTgtaagttctt ... tttgctccagTCATCAGCTACCAAGAATTCTCTTGTGGTGTTAGATGAGCTTGGACGGGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTGTTGACCGTATCTTCGTTCGAATGGGAGCAAGGGATCATATTATGGCTGGCCAAAGTACATTCTTGGTGGAGCTCGAGGAGACTGCCTCAGTGCTTgtaagttcttccttggagatatgaggatttatattaatttttaattttgtatgttctcaaccgtgttcaacttttgctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA